Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A11
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 49 5e-06
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 46 4e-05
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 35 2e-04
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 35 0.087
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 35 0.087
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 35 0.087
06_03_0974 - 26459747-26460190,26460278-26460946 32 0.61
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 31 1.4
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 31 1.4
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 30 1.9
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 3.3
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 29 3.3
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 4.3
12_02_0735 - 22636835-22639502,22639755-22640734 29 5.7
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828... 29 5.7
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 29 5.7
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 28 7.5
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 28 9.9
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/69 (31%), Positives = 28/69 (40%)
Frame = +1
Query: 565 CDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFAT 744
C GC G + + WH +CF C C PI F E + Y CY+D F
Sbjct: 257 CAGCKNPIGHG-RFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHP 315
Query: 745 RCVKCNKII 771
+C C I
Sbjct: 316 KCDVCKNFI 324
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 561
C C IG + LS D WH CF C C + + +F D+ Y +CY F
Sbjct: 257 CAGCKNPIG-HGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHP 315
Query: 562 RCDGCGEVFRAGTKKM-EYKTRQWHEKCFC 648
+CD C + EY+ + + +C
Sbjct: 316 KCDVCKNFIPTNRNGLIEYRAHPFWMQKYC 345
Score = 44.8 bits (101), Expect = 8e-05
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 232 GEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKII 405
G + M+ WH F C+ C++ ++ + + ++ PY CY+ F C+ C I
Sbjct: 267 GRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPKCDVCKNFI 324
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 46.0 bits (104), Expect = 4e-05
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 561
C C+ IG + LS WH CF C C + D +F + Y CY +F
Sbjct: 558 CAGCHSEIG-HGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHP 616
Query: 562 RCDGCGEVFRAGTKKM-EYKTRQWHEKCFC 648
+CD C + + EY+ + + +C
Sbjct: 617 KCDVCKQFIPTNMNGLIEYRAHPFWLQKYC 646
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +1
Query: 565 CDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFAT 744
C GC G + + WH +CF C C PI F Y CY+++F
Sbjct: 558 CAGCHSEIGHG-RFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHP 616
Query: 745 RCVKCNKII 771
+C C + I
Sbjct: 617 KCDVCKQFI 625
Score = 41.5 bits (93), Expect = 8e-04
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 232 GEYTKAMNKDWHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVFANGCEECNKII 405
G + M WH F C C++ + + + HPY CY+ F C+ C + I
Sbjct: 568 GRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQFI 625
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 34.7 bits (76), Expect(2) = 2e-04
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQF 555
C C+K + + K L+ ++ +H+ACF C C+ +L + S +YC +D F
Sbjct: 12 CMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLF 68
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 559 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 738
++C C + K+ R +H+ CF C CK + ++ E +YC ++ F
Sbjct: 10 TKCMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLF 68
Score = 28.3 bits (60), Expect(2) = 2e-04
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +1
Query: 562 RCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 714
+C GC + +++ +H+ CF C I ++I E ++YC
Sbjct: 109 KCVGCNKTVYP-IERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 34.7 bits (76), Expect = 0.087
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDK-HWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFA 558
C C+K + DL D +H++CF C+ C+ +L + S +YC ++ Q
Sbjct: 10 CNACDKTVHFI--DLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFE-QLF 66
Query: 559 SRCDGCGEVFRAGTK--KMEYKTRQWHEKCFC-----CVVCKNPIGTKSFIPREQEIYCA 717
+ F +GTK + K FC C CK + + E E Y
Sbjct: 67 KETGTFKKNFPSGTKANSEQAKIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHR 126
Query: 718 GCYE 729
C++
Sbjct: 127 TCFK 130
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 628 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 738
+H+ CF C CK + S+ + +YC +E F
Sbjct: 30 YHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFEQLF 66
Score = 28.3 bits (60), Expect(2) = 0.67
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGN 537
C C K + + ++ + + +H CF CA L + + S +YC N
Sbjct: 104 CTACKKTV-YPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQN 154
Score = 22.2 bits (45), Expect(2) = 0.67
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 262 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVF 372
+H F C C +L+ Y D YC +E +F
Sbjct: 30 YHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFEQLF 66
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 34.7 bits (76), Expect = 0.087
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYD 546
C+ C + + ++L+ + +H CF C C+ +L + S +YC YD
Sbjct: 13 CDSCGRTV-YPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYD 66
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 562 RCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYE 729
+CD CG +++ R +H CF C CK + ++ E +YC Y+
Sbjct: 12 KCDSCGRTVYP-VEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYD 66
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 442 HWHEACFLCAKCRVSLVDKQFGSKLD--KIYCGNCYDAQFASR--CDGCGEVFRAGTKK 606
+WHE + + ++ G +LD ++YCG+CY ++ + C+ C +V A KK
Sbjct: 164 YWHEGVVILLFLTIERPLQKHGGRLDHNEVYCGSCYGSEESDDQCCNSCEDVRDAYRKK 222
>06_03_0974 - 26459747-26460190,26460278-26460946
Length = 370
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +1
Query: 529 CGNCYDAQFASRCDGCGEVFR-AGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQE 705
CG C + A C GCG V+ R HE+ + C VC+ + +
Sbjct: 14 CGACEASPAAVHCRGCGGVYLCTACDARPGHARAAHERVWVCEVCEVAPAAVT-CKADAA 72
Query: 706 IYCAGCYED 732
+ CA C D
Sbjct: 73 VLCAACDAD 81
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 649 CVVCKNPIGTKSFIPREQEIYCAGC---YEDKFATRCVKCN 762
CV+CK + ++ C GC +E+K RC CN
Sbjct: 656 CVICKREEACVILLQCAHQVLCVGCNKRHEEKGVARCPCCN 696
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 30.7 bits (66), Expect = 1.4
Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 7/136 (5%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 561
C C IG LS +WH CF C+ CR + + + + C + S
Sbjct: 114 CGGCKHEIG-HGHYLSCLGMYWHPQCFRCSSCRHPIREMEVTFLQFSLECLKVFSGS-DS 171
Query: 562 RCDGCGEVFRAGT---KKMEYKTRQWHEKCFCCV--VCKNPIGTKSF--IPREQEIYCAG 720
+ GT K+ YK H KC C+ + N G + P + YC
Sbjct: 172 LLYSVSQFTLLGTDPYHKLCYKELH-HPKCDVCLQFIPTNRTGLIEYRAHPFWGQKYCP- 229
Query: 721 CYEDKFATRCVKCNKI 768
+E RC C K+
Sbjct: 230 LHEHDRTPRCCSCEKM 245
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 561
C+ C+K + L+ +H+ CF C+ C+ +L + S +YC ++ Q
Sbjct: 10 CKACDKTVHFIDL-LTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFE-QLFK 67
Query: 562 RCDGCGEVFRAGTKKME 612
+ F G K E
Sbjct: 68 ETGSFSKKFSQGGKSSE 84
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 628 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQGG 783
+H+ CF C CK + ++ + +YC +E F +K +QGG
Sbjct: 30 YHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLF-KETGSFSKKFSQGG 80
Score = 25.8 bits (54), Expect(2) = 4.2
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYC 531
C C K + + L+ + + +H++CF C+ L + + +YC
Sbjct: 106 CAACQKTV-YPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYC 154
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 262 WHSGHFCCWQCDESLTGQRYVLRDEHPYCIKCYESVF 372
+H F C C +L+ Y D YC +E +F
Sbjct: 30 YHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLF 66
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 283 CWQCDESLTGQRYV-LRDEHPYCIKCYESVFANGCEE 390
CW D+ L + Y L+ PY CYE+ F C +
Sbjct: 224 CWNVDDKLLQESYPGLKVVGPYVDDCYENSFWEECSD 260
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 496 KQFGSKLDK--IYCGNCYDAQFASR--CDGCGEVFRAGTKK 606
++ G +L K YCG CY A+ + C+ C EV A KK
Sbjct: 133 QKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEEVREAYKKK 173
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +1
Query: 505 GSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH-EKCFC 648
G D CG C D CD C F ++ + WH C C
Sbjct: 727 GDDPDDDTCGICGDGGDLLCCDNCPSTFHLACLGIKMPSGDWHCSSCIC 775
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 529 CGNCYDAQFASRCDGCGEVFRAGT 600
C CY A C GC E F AG+
Sbjct: 183 CKECYAECAAGNCPGCKEAFSAGS 206
>04_04_0097 -
22782031-22782122,22782504-22782570,22782769-22782861,
22782981-22783034,22783163-22783214,22783346-22783413,
22783532-22783711,22783843-22783935,22784585-22784665,
22785011-22785091,22785204-22785331,22786502-22786643
Length = 376
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 496 KQFGSKLD--KIYCGNCYDAQFASR--CDGCGEVFRAGTKK 606
++ G +L+ + YCG+CY A+ + C+ C +V A KK
Sbjct: 123 QRHGGRLEHNETYCGSCYGAEESDEQCCNSCEDVREAYRKK 163
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 565 CDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPI 672
C GC G + + WH +CF C C PI
Sbjct: 178 CAGCKTPIGQG-RFLSCMDSVWHPQCFRCFACDRPI 212
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 28.3 bits (60), Expect = 7.5
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Frame = +1
Query: 382 CEECNKIIGIDSKDLSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFAS 561
C C+K + L+ +H+ CF C+ C+ L + S +YC ++ Q
Sbjct: 10 CTACDKTVHFIDL-LTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFE-QLFK 67
Query: 562 RCDGCGEVFRAGTKKMEYKTRQWHEK-CFC-------CVVCKNPIGTKSFIPREQEIYCA 717
+ F G + + + + K C C C+ + + E E Y
Sbjct: 68 ETGSFSKKFAPGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHK 127
Query: 718 GCYEDKFATRCVKCNKIITQGGVTY 792
C++ + + GV Y
Sbjct: 128 SCFKCSHGGCILTTSSYAALNGVLY 152
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 529 CGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQ 627
CG C D CDGC F ++E +RQ
Sbjct: 961 CGICGDGGNLICCDGCPSTFHMSCLELEEHSRQ 993
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,371
Number of Sequences: 37544
Number of extensions: 312476
Number of successful extensions: 1097
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -