Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A10
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 77 2e-14
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 32 0.48
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical ... 31 1.5
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 5.9
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 5.9
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 5.9
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 5.9
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 7.8
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 28 7.8
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +3
Query: 219 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 398
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 399 YAILGFALSE 428
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +3
Query: 219 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 398
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 399 YAILGFALSE 428
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +3
Query: 219 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 398
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 399 YAILGFALSE 428
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = +2
Query: 44 GVLCCRAPHLIKTKCCLPP----VLIAPDSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 211
G +C ++ +L K CC P + P + C+ C + D CCPY
Sbjct: 151 GYVCSKSQYLNKFICCSNPDGEIMGSCPGGETPLENIQCSATKPCPNGFSCNDKKCCPYA 210
Query: 212 ALCSAVLP 235
+ C A P
Sbjct: 211 SACPAGAP 218
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 335 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 171
CS+ + S SHC T + RV ++ C P CR +LC SRY M Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355
Query: 170 CCKWSHQC 147
C K C
Sbjct: 356 CPKACGHC 363
>Z81588-4|CAB04713.1| 413|Caenorhabditis elegans Hypothetical
protein T07D10.4 protein.
Length = 413
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 CRAPHLIKTKCCLPPVLIAPDSQVCHLLQLCTGATTCSSTHP--YTDGTCCPYT 211
C+ P ++ +PP +AP S C+ +L A S +P Y + C YT
Sbjct: 276 CKRPAGVQCPA-VPPTTVAPSSSYCNAGRLMNNAVITSPNYPENYFNNANCTYT 328
>AL031624-1|CAA20940.1| 413|Caenorhabditis elegans Hypothetical
protein H16D19.1 protein.
Length = 413
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 CRAPHLIKTKCCLPPVLIAPDSQVCHLLQLCTGATTCSSTHP--YTDGTCCPYT 211
C+ P ++ +PP +AP S C+ +L A S +P Y + C YT
Sbjct: 276 CKRPAGVQCPA-VPPTTVAPSSSYCNAGRLMNNAVITSPNYPENYFNNANCTYT 328
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 516 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 602
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.9
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -1
Query: 440 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 264
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 263 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 147
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.9
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -1
Query: 440 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 264
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 263 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 147
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 472 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 344
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 641 PVDAHCRCNTHQSLHHYEGEV 579
P+ CRCNT +LH EG V
Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 188 LCMGGYCCKWSHQCRVAEDGRPGCQGRSXLAADSILFL*GAARDNKEHREGGDR-PLECS 12
LC G CC WS C + + C G + + L G+ D+ H +G DR EC+
Sbjct: 698 LCEGQSCCNWSEWCHWSMCDKE-CGGGQSIRTRTCLNSAGSP-DSSCHCDGPDREEKECN 755
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = -1
Query: 506 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 351
V+ +S E E+++ERH + ++T S+R T + + +++ + +A
Sbjct: 9 VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66
Query: 350 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 264
+ S T S T+Y +C++ + + SR
Sbjct: 67 PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 77 KTKCCLPPVLIAPDSQVCHLLQLCTGATTCSSTHPYTDGTCCP 205
KT CC P+ + S + C A C ++G CCP
Sbjct: 431 KTTCCQEPIKLPVCSNGMISQKRCLVAAECGLNLECSNGGCCP 473
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,524
Number of Sequences: 27780
Number of extensions: 436465
Number of successful extensions: 1549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -