Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A08
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 122 5e-29
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 6e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.010
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.013
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.022
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.022
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.022
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.022
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.090
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 29 0.64
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.84
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.84
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 1.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.9
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.6
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 7.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 7.8
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 122 bits (295), Expect = 5e-29
Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 17/253 (6%)
Frame = +3
Query: 147 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 311
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + I +RV ++
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65
Query: 312 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 476
A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L K
Sbjct: 66 AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123
Query: 477 SSNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNKYIPP---S 635
+ + +CR C+G+H T CP+K +YI P +
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRA 183
Query: 636 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 815
+GR G R+D +R++NLS+ E ++ DL + FG + ++YLAK+K TG K
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 816 GFAYVHFKFRAXA 854
GFA+V + R A
Sbjct: 244 GFAFVSYYDRDCA 256
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 669 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
P + + I ++ + A E ++DL FGPV L+L ++ TG+ KG+A + +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 684 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D + +S L+N ++ D + GPV + ++K +G KG AYV F
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.013
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 702 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
+ NL+ E D+ L FG + ++++ +K T + KGFAY+ F
Sbjct: 327 LRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.022
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 684 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D ++ + N+ ++ G V+++ + +K TGH KGFAY+ F
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 675 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
++E + + + NL +AD+ + G + ++ L + TG CKGF +V F
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 681 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
E + + NLS A E D+ G G + + L + +G KGF YV F
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 702 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
+S LS E+DI+ +GP+ ++ + + K TG G+A+V F+
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.3 bits (70), Expect = 0.090
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 621 YIPPSSAGRIPGRDQPPVRREDVT----AIRISNLSNFAVEADIDDLVKGFGPVHKLYLA 788
YI P + + + DV I ISNL E + +L+K FG + L
Sbjct: 283 YIVPQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI 342
Query: 789 KEKSTGHCKGFAYVHFK 839
K + G KGF + FK
Sbjct: 343 KNIADGSSKGFCFCEFK 359
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 183 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 317
PP ++VV+ K D++ + +V TY I K V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.84
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Frame = +3
Query: 189 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 353
P E +E + +++++ + + + + T + +R S AK+K +KF D S
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351
Query: 354 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 476
+K P+ T + +DV TS+ E R GEL GL P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 693 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
++ + L EA + +L GPV + + ++ T G+AYV+F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 666 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
P +R+ + I NL + D FG + +A ++ G+ KG+ +VHF
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 669 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
P RED I L+ + + D + FG V + ++ +TG +GF ++ FK
Sbjct: 157 PFNREDGKMF-IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 711 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFK 839
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 684 DVTAIRISNLSNFAV--EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
D + + + NL + + ++ ++DL FG + LA ++G KG+ +V F+
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +3
Query: 249 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 428
NK + + IEK V K AKRK + + G K P E+ + +
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231
Query: 429 ESQRPDDGELDGLKPPSSNVI 491
+ D +D P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.6
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +3
Query: 156 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 332
EVE+D+ V + V LKIV E KY + + R +E + SI R +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165
Query: 333 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 452
+ D +D + + D F++ + +E ++ DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 696 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAXA 854
+ + N+ E + D+ K GPV L + +G KG+ + + A A
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATA 59
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 156 EVEIDQGVLPPPSEVVENGLKIVTEYKY 239
EVE++ V+ P S EN + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 189 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 368
PS + K + KY+N + + I R V+ S R+ + F D +D+P
Sbjct: 50 PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103
Query: 369 NPATTN 386
PA+T+
Sbjct: 104 APASTS 109
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 675 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
R +D T I + NL ++ + +L GPV +++ +++ GF + F
Sbjct: 7 RNQDAT-IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,825
Number of Sequences: 5004
Number of extensions: 60378
Number of successful extensions: 189
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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