Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_A08
(856 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 92 4e-19
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 35 0.064
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 35 0.085
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 34 0.15
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.20
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.34
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.34
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 32 0.60
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 0.79
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.4
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 30 2.4
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 30 2.4
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.2
Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 29 5.6
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 29 5.6
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 29 5.6
U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical pr... 29 5.6
U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical pr... 29 5.6
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 29 5.6
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical... 28 7.4
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 7.4
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 92.3 bits (219), Expect = 4e-19
Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 1/238 (0%)
Frame = +3
Query: 144 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 323
SWA+ VE D P + +G + T + + D + K+V +K+ + V K +A RK
Sbjct: 9 SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64
Query: 324 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCR 503
W KFG + GP ATT VAE+V MQF ++ Q D E +S CR
Sbjct: 65 KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKTTSRE--HCR 122
Query: 504 TCQG-DHLTLYCPFKHTQIXXXXXXXXXXXXXXXXXXSNKYIPPSSAGRIPGRDQPPVRR 680
C+G DH + +CP+K + + G P Q R
Sbjct: 123 HCKGNDHWSTHCPYK----------VMYQLDEEADADKDTEKDRMAMGMRPDGRQIDRNR 172
Query: 681 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAXA 854
D R++NL E ++ DL G V ++++A++K TG KGFA+V F+ R A
Sbjct: 173 SDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDA 230
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 702 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
+ NLS++ E D+ D+ FG ++K L ++ +G+ +GF +++F
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYF 124
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 702 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 842
+ NL E D+ L K +G V ++ + +K TG CKGFA V F F
Sbjct: 283 LRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVF 329
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 684 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D ++ + N+ A +I+ G G V ++ + ++ +GH KGFAYV F
Sbjct: 76 DAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEF 126
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 35.5 bits (78), Expect = 0.049
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 633 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAV---EADIDDLVKGFGPVHKLYLAKEKST 803
SS GR + Q V+++ + I + + E ++ + FG V ++ +A+ + T
Sbjct: 10 SSGGRKQPQKQDKVQKKQLKKIYVVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRT 69
Query: 804 GHCKGFAYVHFKFRAXA 854
G+ KG+AYV F +A A
Sbjct: 70 GNHKGWAYVGFDNKAVA 86
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 35.1 bits (77), Expect = 0.064
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 150 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKT 326
AD I +GV P E+ + NGL V E Y+ND +K +T + +V S K K
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380
Query: 327 WSKFGDSASD 356
+ D SD
Sbjct: 381 QEESDDEESD 390
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 34.7 bits (76), Expect = 0.085
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 702 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
+ NLS E I + + FG + + K K +GH KG A+VHF
Sbjct: 267 LRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHF 311
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 711 LSNFAVEADIDDLVKGF----GPVHKLYLAKEKSTGHCKGFAYVHFK 839
+ N E D L+ F GPV + + ++K TG KGFA+V+FK
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 666 PPVRRE----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 833
PP E D ++ I N+ + +I++ KG G + K + K+K T K FAY+
Sbjct: 43 PPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIE 102
Query: 834 F 836
F
Sbjct: 103 F 103
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 687 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAXA 854
+T+++I NLS D+ + +G + +++ ++K + KGF +V F R A
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 687 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAXA 854
+T+++I NLS D+ + +G + +++ ++K + KGF +V F R A
Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 678 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
+ D ++ + N+ + ++I++ G V ++ + K+K TG+ K FA+V F+
Sbjct: 42 KTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 666 PPVRRE----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 833
PP E D ++ I N+ + ++++ KG G + + + K+K T K FAY+
Sbjct: 49 PPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIE 108
Query: 834 F 836
F
Sbjct: 109 F 109
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 267 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 395
+ YKI +S + KRKT KFGD A D P NP TT+ E
Sbjct: 6 ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 666 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
P V R I + L E+ + +L+ GPV + + K++ T + +GF +V F
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 666 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
P V R I + L E+ + +L+ GPV + + K++ T + +GF +V F
Sbjct: 15 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 71
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 153 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTY-KIEKRVVSKSIAKRKTW 329
D V+ID+ + +E+V+ +IVT++ + +V I+ Y K+ ++ K IA R+ W
Sbjct: 90 DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 660 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V F
Sbjct: 43 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 660 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V F
Sbjct: 63 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 660 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 836
D PP R+ + I LS+ + + + +GPV + ++ +T H +GF +V F
Sbjct: 64 DSPPQLRK----LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 759 FGPVHKLYLAKEKSTGHCKGFAYVHFK 839
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 759 FGPVHKLYLAKEKSTGHCKGFAYVHFK 839
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 759 FGPVHKLYLAKEKSTGHCKGFAYVHFK 839
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>Z81494-4|CAB04050.2| 319|Caenorhabditis elegans Hypothetical
protein F02E9.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +3
Query: 153 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 332
D + + PPS LK + K D +K+ K + K KR+ S++I K WS
Sbjct: 47 DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103
Query: 333 KFGDSASDKPGPNPATTNVAEDV 401
+F + T + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 14 SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 115
+S+ S + YL+++ S+D S+W I+YM R
Sbjct: 920 TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 195 EVVENGLKIVTEYKYDNDNKKVKIV 269
+ V+ K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 195 EVVENGLKIVTEYKYDNDNKKVKIV 269
+ V+ K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431
>U40954-3|AAL00885.1| 171|Caenorhabditis elegans Hypothetical
protein ZK813.4a protein.
Length = 171
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 500 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 354
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156
>U40954-2|ABB88226.1| 152|Caenorhabditis elegans Hypothetical
protein ZK813.4b protein.
Length = 152
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 500 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 354
T+K NI W++ ++ + L L GD ++++DI I+ R RP++V
Sbjct: 89 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 14 SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 115
+S+ S + YL+++ S+D S+W I+YM R
Sbjct: 920 TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 153 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK----- 317
DEVE+ + V+N KIV + K++ + + +R K+E ++ K IAK
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389
Query: 318 RKTWSKFG 341
R+ KFG
Sbjct: 390 REALGKFG 397
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 204 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 371
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 372 PATTNVAEDVFMQFITSKEESQRPDD 449
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>AF067216-10|AAC17519.1| 492|Caenorhabditis elegans Hypothetical
protein C35E7.3 protein.
Length = 492
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 524 QMVSLTCTTLKDNIAGWWLKTIKLP 450
Q V TC K + G LKTIKLP
Sbjct: 91 QRVQCTCCEYKKELVGCHLKTIKLP 115
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +3
Query: 204 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 371
+N K + E K ++ +K + K V+ + ++ +K + + WSK + ++ P
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224
Query: 372 PATTNVAEDVFMQFITSKEESQRPDD 449
P V E+ +EE + ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 666 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
P RR I I NL + D FG + +A + G+ KG+ +VHF+
Sbjct: 137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFE 193
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 666 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 839
P RR I I NL + D FG + +A + G+ KG+ +VHF+
Sbjct: 137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFE 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,980
Number of Sequences: 27780
Number of extensions: 353451
Number of successful extensions: 1143
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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