Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_A07
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014140-1|AAH14140.1|  721|Homo sapiens Bardet-Biedl syndrome 2...    64   3e-10
AF342736-1|AAK28552.1|  721|Homo sapiens BBS2 protein.                 64   3e-10
AK027635-1|BAB55252.1|  721|Homo sapiens protein ( Homo sapiens ...    63   6e-10
M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein.          32   1.6  
J05211-1|AAA35766.1| 1752|Homo sapiens protein ( Human desmoplak...    32   1.6  
AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein.          32   1.6  

>BC014140-1|AAH14140.1|  721|Homo sapiens Bardet-Biedl syndrome 2
           protein.
          Length = 721

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = +1

Query: 169 KEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKTVVSA 348
           K M +RY E+  LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A
Sbjct: 638 KTMKSRYMELYDLNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITA 697

Query: 349 SRNAVKENNVEALIKIIQVG 408
            R+A++ NN+  L KI++VG
Sbjct: 698 CRDAIRSNNINTLFKIMRVG 717


>AF342736-1|AAK28552.1|  721|Homo sapiens BBS2 protein.
          Length = 721

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = +1

Query: 169 KEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKTVVSA 348
           K M +RY E+  LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A
Sbjct: 638 KTMKSRYMELYDLNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITA 697

Query: 349 SRNAVKENNVEALIKIIQVG 408
            R+A++ NN+  L KI++VG
Sbjct: 698 CRDAIRSNNINTLFKIMRVG 717


>AK027635-1|BAB55252.1|  721|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14729 fis, clone NT2RP3001896. ).
          Length = 721

 Score = 63.3 bits (147), Expect = 6e-10
 Identities = 30/80 (37%), Positives = 49/80 (61%)
 Frame = +1

Query: 169 KEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKTVVSA 348
           K M +RY E+  LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A
Sbjct: 638 KTMKSRYMELHDLNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITA 697

Query: 349 SRNAVKENNVEALIKIIQVG 408
            R+A++ NN+  L KI++VG
Sbjct: 698 CRDAIRSNNINTLFKIMRVG 717


>M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein.
          Length = 2871

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +1

Query: 139  NLIKNVNNSRKEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRV 318
            NL   ++   +E  +   E+V LN+ ++ A   RR  +E+A+        I+Q+   L +
Sbjct: 1234 NLRNQLDRLSRENRDLKDEIVRLNDSILQATEQRRRAEENALQQKACGSEIMQKKQHLEI 1293

Query: 319  GKYSKTVVSASRNAVKENNVEALIKIIQ 402
                     +  NA  + ++E   K IQ
Sbjct: 1294 ELKQVMQQRSEDNARHKQSLEEAAKTIQ 1321


>J05211-1|AAA35766.1| 1752|Homo sapiens protein ( Human desmoplakin
           mRNA, 3' end. ).
          Length = 1752

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +1

Query: 139 NLIKNVNNSRKEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRV 318
           NL   ++   +E  +   E+V LN+ ++ A   RR  +E+A+        I+Q+   L +
Sbjct: 115 NLRNQLDRLSRENRDLKDEIVRLNDSILQATEQRRRAEENALQQKACGSEIMQKKQHLEI 174

Query: 319 GKYSKTVVSASRNAVKENNVEALIKIIQ 402
                    +  NA  + ++E   K IQ
Sbjct: 175 ELKQVMQQRSEDNARHKQSLEEAAKTIQ 202


>AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein.
          Length = 2871

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +1

Query: 139  NLIKNVNNSRKEMLNRYKEVVMLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRV 318
            NL   ++   +E  +   E+V LN+ ++ A   RR  +E+A+        I+Q+   L +
Sbjct: 1234 NLRNQLDRLSRENRDLKDEIVRLNDSILQATEQRRRAEENALQQKACGSEIMQKKQHLEI 1293

Query: 319  GKYSKTVVSASRNAVKENNVEALIKIIQ 402
                     +  NA  + ++E   K IQ
Sbjct: 1294 ELKQVMQQRSEDNARHKQSLEEAAKTIQ 1321


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,210,156
Number of Sequences: 237096
Number of extensions: 1099385
Number of successful extensions: 1776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)