Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P24
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0500 - 25677767-25680850                                         28   3.0  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    28   3.0  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   4.0  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    27   4.0  
04_03_0314 - 14238620-14240128                                         27   5.3  
11_01_0583 + 4636832-4637521                                           27   7.0  
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    26   9.2  
01_01_0522 - 3834551-3835451,3835992-3836572                           26   9.2  

>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 285 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 187
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 187 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNK 65
           W EAL L P  + G   P +LYQ  L  P   +L++ V+ +
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 243 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 133
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 365 KDYQVLICIVYLVRSYCDLRIMGFFTALIVNIV 267
           KD +++IC +Y V S C   IM   +  IV IV
Sbjct: 139 KDIEIVICFIYAVDSVCSRLIMLQSSLDIVMIV 171


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 163 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 300
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 127 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 267
           +L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227


>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
            43147383-43150081
          Length = 1029

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 190  IPDALKPSRGATIGIKNP---PMQRTAPPTMLTIRAVKNPMILKSQ*LLTRYT 339
            +PDA  P+ GA  G   P   P+ R A  + + +++   P   K   LL R T
Sbjct: 958  LPDADGPAAGAGAGATTPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVT 1010


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 187 IIPDALKPSRGATIGIKN--PPMQRTAPPTM 273
           ++P  L+P+R A  G K   PP     PPT+
Sbjct: 243 VVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,766
Number of Sequences: 37544
Number of extensions: 224522
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)