Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P23
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   3.3  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   7.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -3

Query: 553 GYWRNIQPQKHI*L*TARSTRHSGRYNHRHRRQPLGGRVWRLMRAQDXS*KRRNPTKISN 374
           GY+ N+ P  +  +  +  T+ +    +++R Q   G++W L      S    N T  SN
Sbjct: 154 GYYTNLTPVFNSSILFSSITKINFSRGYKYRIQLTDGKIWFLYAFPTSSSSTFNLTLASN 213

Query: 373 SRRTSN 356
           S+ T++
Sbjct: 214 SQLTTS 219


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = -3

Query: 499 STRHSG-RYNHRHRRQPLGGRVWRLM--------RAQDXS*KRRNPTKISNSRRTSNFGD 347
           S +++G R NHR R QP   R W L+        RAQD   K++   ++       N  +
Sbjct: 4   SFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDE 63

Query: 346 F 344
           F
Sbjct: 64  F 64


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 408  DXS*ARMSLQTRPPKGC 458
            D S ARM+ +  PPKGC
Sbjct: 1314 DSSLARMNREVSPPKGC 1330


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 14  YNICLCISKYQTYQNKVYK 70
           YN+CL ISKY   + K +K
Sbjct: 185 YNLCLDISKYPLLEGKDWK 203


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 212 TLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKIS 328
           ++++  P TPS  TI   P   S  LP+   A+ T  IS
Sbjct: 187 SMSVPPPLTPSASTINDQPFSNSFDLPSQVIADGTGAIS 225


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 546 QYPHHNQILXSKTALNLCNKTPFPSS---PKRGRLIMTQFRSSSLVSHL 683
           +Y  HN+     + L L  KTP  S+   PK  ++ +T   SSS V HL
Sbjct: 76  EYNSHNKHALQNSQLPL-PKTPEKSTVHRPKANKVEVTDLPSSSSVEHL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,541
Number of Sequences: 5004
Number of extensions: 58144
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)