Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P20
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.17 
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   0.93 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   2.8  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    24   5.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    24   5.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   6.6  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 119  ILSALYNNYHEATPAFI*FKRTEIQNFLCSHCFGCESIIKPFSKIPKNCFQISDI 283
            +  ++Y N   A  +   +K +  + F+C  C    +++ P  +IPK C  I  +
Sbjct: 1442 VARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVLLPMPQIPKMCLNIDTL 1496


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 183 RKFKISYARIVLVARVSLNHFPKYLRIASKFQIFKKTKMV 302
           R+F +++   + +AR   N    YL  +  F IFK+ +++
Sbjct: 221 REFSLTFLNTLKLARDFPNEIRSYLEASKNFNIFKEKEIL 260


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 150 RLLQHLFNLSERKFKISYAR--IVLVARVSLNH 242
           +L  HL+NL  +   ++YAR  I L  +++++H
Sbjct: 540 KLSNHLYNLCVKSSNVNYARECISLSIKIAVSH 572


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 135 ITITTRLLQHLFNLSERKFKISYARIVLVARV 230
           IT TTR L+ +  LSE   K+    +V V  V
Sbjct: 768 ITATTRQLESMIRLSEAHAKMHLRNVVEVGDV 799


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 65  THTTNTFIIKLYNLLVHSILS 127
           ++ T+T +I ++NLL+ SILS
Sbjct: 511 SNPTSTVLISMHNLLLASILS 531


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 152 ATPAFI*FKRTEIQNFLCSHCFGCESIIKPF 244
           ++  +I F  + +   L S+CF  E+I+ PF
Sbjct: 633 SSDVWILFTNSNVSVNLKSNCFSKEAIVSPF 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,919
Number of Sequences: 5004
Number of extensions: 27348
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)