Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P20
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692     27   2.5  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    26   5.7  

>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
          Length = 540

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 14  SASAFV*LHTKFI*RRPTHTTNTFIIKLYNLLVHSILSALYNNYHEATPAF 166
           SA     L+  +  ++P   T   +++  N++VHS  S+    +HEA P+F
Sbjct: 340 SAPQVAVLYPPYSSQKPASATTEPLLR--NMVVHSPYSSPQQKHHEAMPSF 388


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 115 MYQKII*FYNKSVSCVRGSALNKFCMKLNECRRGD---IGC 2
           +Y+K++    K +  +  SAL+  C  L++ RR D   IGC
Sbjct: 107 IYRKLLVSCKKQMPLLASSALSIICTLLDQTRRDDMRIIGC 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,310,591
Number of Sequences: 37544
Number of extensions: 147246
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)