Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P20
(320 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032641-1|CAA21645.1| 132|Caenorhabditis elegans Hypothetical ... 28 1.3
Z78062-8|CAD56570.2| 299|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z78062-7|CAD56571.2| 270|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z78062-6|CAN99661.1| 274|Caenorhabditis elegans Hypothetical pr... 25 9.2
AL021571-10|CAD56601.2| 299|Caenorhabditis elegans Hypothetical... 25 9.2
AL021571-9|CAA16511.3| 270|Caenorhabditis elegans Hypothetical ... 25 9.2
AL021571-8|CAN99720.1| 274|Caenorhabditis elegans Hypothetical ... 25 9.2
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 25 9.2
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 25 9.2
>AL032641-1|CAA21645.1| 132|Caenorhabditis elegans Hypothetical
protein Y5F2A.1 protein.
Length = 132
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 141 LL*SALNMECTKRLYNFIIKVLVVCVGRR*IN 46
LL +A +ECT RL N +K + VC +R N
Sbjct: 8 LLLAACALECTARLQNVTVKGVAVCNKKRLAN 39
>Z78062-8|CAD56570.2| 299|Caenorhabditis elegans Hypothetical
protein T19A6.1b protein.
Length = 299
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 73 NILRILFWFGKWFDNALLAQSI 94
>Z78062-7|CAD56571.2| 270|Caenorhabditis elegans Hypothetical
protein T19A6.1a protein.
Length = 270
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 69 NILRILFWFGKWFDNALLAQSI 90
>Z78062-6|CAN99661.1| 274|Caenorhabditis elegans Hypothetical
protein T19A6.1c protein.
Length = 274
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 73 NILRILFWFGKWFDNALLAQSI 94
>AL021571-10|CAD56601.2| 299|Caenorhabditis elegans Hypothetical
protein T19A6.1b protein.
Length = 299
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 73 NILRILFWFGKWFDNALLAQSI 94
>AL021571-9|CAA16511.3| 270|Caenorhabditis elegans Hypothetical
protein T19A6.1a protein.
Length = 270
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 69 NILRILFWFGKWFDNALLAQSI 90
>AL021571-8|CAN99720.1| 274|Caenorhabditis elegans Hypothetical
protein T19A6.1c protein.
Length = 274
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 274 NLEAILRYFGKWFNDTLATKTM 209
N+ IL +FGKWF++ L +++
Sbjct: 73 NILRILFWFGKWFDNALLAQSI 94
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 136 CMKGFRSLGKVCIDLNECDNGAV 158
>AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform j protein.
Length = 255
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 177 CMKGFRSLGKVCIDLNECDNGAV 199
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 185 CMKGFRSLGKVCIDLNECDNGAV 207
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 185 CMKGFRSLGKVCIDLNECDNGAV 207
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 185 CMKGFRSLGKVCIDLNECDNGAV 207
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 177 CMKGFRSLGKVCIDLNECDNGAV 199
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 189 CMKGFRSLGKVCIDLNECDNGAV 211
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 CVRG-SALNKFCMKLNECRRGDI 8
C++G +L K C+ LNEC G +
Sbjct: 189 CMKGFRSLGKVCIDLNECDNGAV 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,728,862
Number of Sequences: 27780
Number of extensions: 151187
Number of successful extensions: 298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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