Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P20
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   0.91 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   6.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   8.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   8.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   8.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   8.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 316 WLLCATIFVFLNI*NLEAILRYFGKWFNDTLATKTMR 206
           W+   ++FVFL++     +  Y G      +ATK M+
Sbjct: 279 WMSSCSVFVFLSLMEFAVVNNYMG-----PVATKAMK 310


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 113 HSILSALYNNYH 148
           H I+S+L NNY+
Sbjct: 79  HKIISSLSNNYN 90


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 113 HSILSALYNNYH 148
           H I+S+L NNY+
Sbjct: 79  HKIISSLSNNYN 90


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 113 HSILSALYNNYH 148
           H I+S+L NNY+
Sbjct: 79  HKIISSLSNNYN 90


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 137 YKVHLIWNVPKDYIIL**KC*LCAWVGVK 51
           Y  ++ W +    +++   C  C W GVK
Sbjct: 168 YVGNIRWELAGTLLLVWILCYFCIWKGVK 196


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 16  RVGIRLTSYKIYLTP 60
           R G+RL+S + ++TP
Sbjct: 258 RNGVRLSSARAFITP 272


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  IKLYNLLVHSILSALYNNYHE 151
           IKL +L    IL  +YNN  E
Sbjct: 187 IKLNSLDTEQILDDMYNNNTE 207


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 302 YHFCFLKYLKFGSNS*VFWKMV 237
           ++F F+K +   SNS  F K+V
Sbjct: 306 FNFAFIKNVSRDSNSSDFKKLV 327


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 83  FIIKLYNLLVHSILSALYNNYHE 151
           FII  +N +  +I    Y  YH+
Sbjct: 15  FIIGFFNAISGAIKGNDYQRYHQ 37


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 178 LKLNKCWSSLVVIVIKCT 125
           + LNK  S ++  ++KCT
Sbjct: 418 ISLNKLTSYVISGIVKCT 435


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 135 ITITTRLLQHLFNLSERKFKISYARIVLVARVSLN 239
           +T  TRL +H+ N+  R  K     I      SLN
Sbjct: 12  LTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLN 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,595
Number of Sequences: 438
Number of extensions: 2012
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)