Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P17
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    51   4e-08
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   1.4  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   2.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   5.8  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    24   7.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    24   7.6  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 51.2 bits (117), Expect = 4e-08
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -3

Query: 191 RRFELNAXPDDTVGDLKKLIAAQTGTRYDKIVLKKW 84
           ++  +   PDDTVGD KKL+AAQTGT   +IVLKKW
Sbjct: 12  KKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKW 47



 Score = 43.6 bits (98), Expect = 9e-06
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = -2

Query: 225 MLEVTCNDRLGKKVRVKCXP*RYRG*FKEV 136
           M+EV CNDRLGKKVRVKC P    G FK++
Sbjct: 1   MIEVLCNDRLGKKVRVKCMPDDTVGDFKKL 30



 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -1

Query: 70  KDHIKLADYEIHDGMNLEL 14
           KD+I LADYEIHDGM+LE+
Sbjct: 52  KDNITLADYEIHDGMSLEM 70


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 85  HFLSTILSYLVPVCAAINFFKSPTVSSGXAFNSNLLTESIIACY 216
           HF   + ++ +P+ A ++  K P + SG    + +L  S+   Y
Sbjct: 36  HFWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRY 79


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 122 FVRLLTSLNHPRY 160
           FV+ +TSLNHP Y
Sbjct: 87  FVKYITSLNHPEY 99


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 106 SYLVPVCAAINFFKSPTVSSGXAFNSNLLTESIIACYFKHFA 231
           S ++PV AA+ FF   T       + N+ T S+    F  FA
Sbjct: 342 SQIIPVEAALGFFPDITPEHPLPTDKNIFTYSLKTSSFVPFA 383


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 237  ISSQFY*EIKYINSNFLFVLVILPPFKIFT 326
            ISS  Y ++ + +SNFLF  + +  + + T
Sbjct: 1204 ISSTLYLKVSFCSSNFLFKTISVLVYDLIT 1233


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 207 CMLLQAFCSQISSQFY*EIKYINSNFLFVLVILPPF 314
           C L + F   +S +      +I+ + + VL++LPPF
Sbjct: 69  CRLKKKFIKSLSKKII-SYHFISFHTIVVLLLLPPF 103


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 94  STILSYLVPVCAAINFFKSPTVSSGXAFNSNLLTESIIA 210
           +T LS  +P  AA+       VSS     SNL+  S IA
Sbjct: 335 ATYLSQCLPKRAALGILSLTIVSSFLMGQSNLIASSRIA 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,546
Number of Sequences: 5004
Number of extensions: 18322
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)