Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P17
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like ...    60   4e-10
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    27   2.7  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    26   6.3  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    26   8.3  
AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical ...    26   8.3  

>U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like
           family protein 5 protein.
          Length = 73

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -3

Query: 191 RRFELNAXPDDTVGDLKKLIAAQTGTRYDKIVLKKWXT 78
           ++  +   P DT+GDLKKLIAAQTGTR++KIVLKKW T
Sbjct: 12  KKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 225 MLEVTCNDRLGKKVRVKCXP 166
           M+E+T NDRLGKKVR+KC P
Sbjct: 1   MIEITVNDRLGKKVRIKCNP 20



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 70  KDHIKLADYEIHDGMNLEL 14
           KDHI L DYEIH+G N EL
Sbjct: 52  KDHITLMDYEIHEGFNFEL 70


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 97  YSRNGTQXXKDHIKLADYEIHD 32
           +S NG Q  +D ++LADYE+ D
Sbjct: 222 WSVNGVQKMRDKMELADYELVD 243


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 97  TILSYLVPVCAAINFFKSPTVSSGXAFNSNLLTESIIACYFK-HFALKSAL 246
           T L YL    +++NFF   T++    F SNL+++ II   F+  FAL   L
Sbjct: 483 TALGYLN---SSLNFFIYSTINPVSIFISNLISKKIIFLIFQVQFALYKTL 530


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 265
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 265
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 265
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 265
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 52  QV*YDPXNXVXHFLSTILSYLVPVCAAINFF 144
           Q+ Y P N   HFL T L  LV     I FF
Sbjct: 14  QIMYRPKNICYHFLVTSLLCLVLFVNVITFF 44


>AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical
           protein W08F4.3 protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 182 RTFLP-SRSLHVTSSILLSNQLSVL 253
           R FLP S ++HVTS I L   LSV+
Sbjct: 171 RGFLPLSSTVHVTSGISLGEPLSVI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,174,407
Number of Sequences: 27780
Number of extensions: 100013
Number of successful extensions: 256
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)