Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P17
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   0.77 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   0.77 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   9.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 140 SLNHPRYRQGL 172
           ++NHPRYRQ L
Sbjct: 337 AINHPRYRQEL 347


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 140 SLNHPRYRQGL 172
           ++NHPRYRQ L
Sbjct: 337 AINHPRYRQEL 347


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 RYRQGLHLTRTFLPSRSLHVTSSI 226
           R R G HL  T++PS  + V S I
Sbjct: 210 RRRLGYHLFHTYIPSALIVVMSWI 233


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 261 IKYINSNFLFVLVILPPFKIFTAV 332
           I++I + +L  L+   PF I+T V
Sbjct: 159 IRFILAAWLIALISAIPFAIYTKV 182


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 56  FNMI-LXXLCXIS*VLFCRI*CQFVRLLTSLNHPRYRQGL 172
           FN++ +  L  I   LF +    +  ++  ++HP+YR  L
Sbjct: 303 FNLVKISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL 342


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 148 SPTVSSGXAFNSNLLTESIIACYFKHFAL 234
           +P V +     S +L   I+ CY   FAL
Sbjct: 684 TPVVRASGRELSYVLLSGILLCYLVTFAL 712


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 91  LSTILSYLVPVC 126
           + TIL  LVPVC
Sbjct: 1   MKTILIALVPVC 12


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 91  LSTILSYLVPVC 126
           + TIL  LVPVC
Sbjct: 1   MKTILIALVPVC 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,999
Number of Sequences: 438
Number of extensions: 1246
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)