Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P16
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 106 3e-24
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 106 3e-24
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 0.64
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 0.64
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 0.64
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 0.64
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 0.64
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 28 1.1
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 2.0
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 27 3.4
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z70213-2|CAA94171.1| 304|Caenorhabditis elegans Hypothetical pr... 26 6.0
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 25 7.9
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 25 7.9
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 25 7.9
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 25 7.9
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 25 7.9
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 25 7.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 106 bits (255), Expect = 3e-24
Identities = 45/87 (51%), Positives = 64/87 (73%)
Frame = -1
Query: 290 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 111
LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+ER
Sbjct: 171 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 230
Query: 110 YEELRKHWGGGVLGNKSNARIAKLRES 30
+EE+RKHWGGGV+ KS+A+ K+ +
Sbjct: 231 HEEIRKHWGGGVMSAKSDAKKLKIERA 257
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 106 bits (255), Expect = 3e-24
Identities = 45/87 (51%), Positives = 64/87 (73%)
Frame = -1
Query: 290 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 111
LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+ER
Sbjct: 151 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 210
Query: 110 YEELRKHWGGGVLGNKSNARIAKLRES 30
+EE+RKHWGGGV+ KS+A+ K+ +
Sbjct: 211 HEEIRKHWGGGVMSAKSDAKKLKIERA 237
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 49 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 198
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 49 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 198
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 49 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 198
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 49 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 198
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 49 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 198
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 290 LPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSKVVEAIK 129
LP LC VPY V+ K+ LG V R N S ++ K+ E ++
Sbjct: 69 LPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 130 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 270
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 267 GRTILHCQGQVPPRCTCT 214
G+ I C VPP+C CT
Sbjct: 51 GQMICTCSPPVPPKCVCT 68
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 215 HRKTCTCLALTNVE--SGDRASFSKVVEAIKTNFNERY 108
HRKTC+C+ N + + F + + + FN++Y
Sbjct: 254 HRKTCSCIFELNEKEYQNIKKQFDEQLNEVVEQFNQKY 291
>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
protein F20G4.1 protein.
Length = 1615
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 254 CIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEA 135
C +KG + + +C ALT +GD S ++++E+
Sbjct: 566 CRIKGDVDIYMMARNGSCLDAALTFAHNGDIDSLTRIIES 605
>Z70213-2|CAA94171.1| 304|Caenorhabditis elegans Hypothetical
protein ZK930.2 protein.
Length = 304
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 188 ELSMCMSCGVQVHRGG-TCP*QCSM 259
++ +C +CG +HR TCP C M
Sbjct: 257 KMKVCENCGANIHRNAPTCP-VCKM 280
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 264 CFNCGEQGHRSNECP 278
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 475 CFNCGEQGHRSNECP 489
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 475 CFNCGEQGHRSNECP 489
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 264 CFNCGEQGHRSNECP 278
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 264 CFNCGEQGHRSNECP 278
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 200 CMSCGVQVHRGGTCP 244
C +CG Q HR CP
Sbjct: 475 CFNCGEQGHRSNECP 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,552,170
Number of Sequences: 27780
Number of extensions: 97699
Number of successful extensions: 340
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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