Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P15
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    36   0.005
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    32   0.11 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    28   1.4  
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    28   1.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   5.6  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   9.8  

>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 797 FDYRGYGDSTNLCPXEEGVVEDALVVYDWLXATADKGGETP-PVFVWGHSLGTAIS 633
           FD RG+G S    P ++G      +V+  L     +  +T  P+F+WGHS+G  ++
Sbjct: 50  FDQRGFGHSRKGGPKKQGCTGGWSLVFPDLDYQILRASDTELPLFLWGHSMGGGLA 105


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 50/210 (23%), Positives = 82/210 (39%)
 Frame = -1

Query: 818 MDFHTIAFDYRGYGDSTNLCPXEEGVVEDALVVYDWLXATADKGGETPPVFVWGHSLGTA 639
           ++ +     YRGYG ST   P E G+  D+    ++L            + V+G S+G A
Sbjct: 116 LNMNVFIISYRGYGKSTG-SPSEAGLKIDSQTALEYL--MEHPICSKTKIVVYGQSIGGA 172

Query: 638 ISAHLLGNLEQLSLRVLDRVLPPPRGLVLEAPFNNLADEVAKHPLSKLVTWLPYYEATFV 459
           ++         L+ +  DR+      L+LE  F ++ D +         T  P Y  + +
Sbjct: 173 VAI-------ALTAKNQDRI----SALILENTFTSIKDMIP--------TVFP-YGGSII 212

Query: 458 EPFRVHPEQRFQSERHLGGAPGLPVLILHARDDVVVPFAVGLQLYKSILSSRSQGGATVA 279
             F     + + S+  +     LPVL L    D +VP        + +L     G A   
Sbjct: 213 SRFCT---EIWSSQDEIRKIKKLPVLFLSGEKDEIVPPP------QMVLLFGLCGSAKKK 263

Query: 278 LHAYEKSENLGHKWICEAKDLTQVIGDFVS 189
            H++ K     H   C      QVI DF++
Sbjct: 264 FHSFPKCT---HNDTCLGDGYFQVIADFLA 290


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 638 ISAHLLGNLEQLSLRVLDRVLPPPRGLVLEAPFNNLADEVAKHPLSKLV 492
           ++ H L N E + L   +  LPP +G  +   F N+  E A+  LSK +
Sbjct: 80  LAKHQLLNKETIKLPSFNFRLPPLQGKTISEHFYNIGLEFAEPHLSKAI 128


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 716 DWLXATADKGGETPPVFVWGHSLGTAISAHLLGNLEQL 603
           DWL + +D     P +FV GHS+G + S   L   E+L
Sbjct: 112 DWLSSISDIS-TMPNIFVGGHSIGGSDSVRALYQEEKL 148


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 746 GVVEDALVVYDWLXATADKGGETPPVFVWGHSLGTAISAHLLGNLEQLSL 597
           G VEDA+  Y +   TA      P  F+  H + TA+S   + ++   SL
Sbjct: 297 GYVEDAVGYYSFDFTTAGDTSVEPLFFLLPHQVDTAVSGTKVTSIVLASL 346


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 248 GHKWICEAKDLTQVIGDFVSAHQ*IFE 168
           GH+W+  A+  TQVI    +  + I+E
Sbjct: 391 GHEWVISARSQTQVISSIEALAKAIYE 417


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 NEISYNLGQVFGLAYPLVSQVLGF 263
           N     LGQ FG+ Y L++  +GF
Sbjct: 645 NSAGERLGQAFGVVYTLLAIFIGF 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,814
Number of Sequences: 5004
Number of extensions: 57925
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)