Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P13
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   4.1  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.5  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   9.5  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +2

Query: 434 LMFVKRRYFPRGDTITSAVPPWYSACRAWPTERSSLGVGYKANITGSRCGAIRLRCPLSH 613
           +M V R     G  +TS + P Y    A    R  L + Y   ITG +  A  L     H
Sbjct: 175 MMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEH 234

Query: 614 AHR 622
            H+
Sbjct: 235 VHQ 237


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 528 SVGQALQAEYHGGTAEVIVSPRGKYLRLTNI 436
           +VG  ++A++  G   V ++P G Y + TN+
Sbjct: 71  AVGDKVEADFKVGDRVVYLTPFGAYAQYTNV 101


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 619 VCMRQWASQTYSTATRTG--DVSFVPNAQRRP 530
           VC+R W SQ+Y    + G  +V  +  +Q++P
Sbjct: 245 VCIRLWGSQSYLQEKKAGLAEVLNISTSQQKP 276


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 467 GDTITSAVPPWYSACRAWPTERSSLGVGYKANITGSRCG 583
           G T TS  PP        PT  ++  VGY  ++T +  G
Sbjct: 182 GSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTG 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,269
Number of Sequences: 5004
Number of extensions: 47624
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)