Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P10
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    28   1.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   3.5  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    25   6.2  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   6.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 21/25 (84%), Gaps = 2/25 (8%)
 Frame = -1

Query: 278 NLLDKEFYVTVTI-NKKEKV-HVRC 210
           NLL+++ Y+TV + NK+EK+ H++C
Sbjct: 42  NLLEQQIYLTVLLGNKREKLRHLKC 66


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 270 RQRILCYSNNKQKREGTCQM*NISLGSRSRAITF*RKLLE 151
           ++ ILC+ + +Q  +GT  + +I   S S   +F RKL+E
Sbjct: 552 KRLILCFEDTQQSNDGTANINSIVNASLSCISSF-RKLIE 590


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 299 QIKGPDPNLLDKEFYVTVTINKKEKVHVRCRIYHWAA--G-QEQLPFEESYWKKPK 141
           + KGP  ++L K+      + KKE +    R+ H  A  G QEQL   +   KK K
Sbjct: 3   KFKGPGLSVLKKKIRDNERLLKKENLPANIRVEHERALLGLQEQLSMAQLEHKKQK 58


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 346 LRNEALRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL 465
           L +EAL+  GC++H S   I +R  N C  S +     ++
Sbjct: 4   LLHEALQ-NGCKLHKSVEFIQSRDDNACFGSYIAVAQNDI 42


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 452 QMESCEYFLLEDVFHRFYIFPNF 520
           +++S    L+++V H FYIF  F
Sbjct: 318 ELKSVSQLLIDEVLHPFYIFQVF 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,096
Number of Sequences: 5004
Number of extensions: 53648
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)