Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P10
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0158 - 26054487-26054672,26054770-26055018,26056003-260566...    31   0.52 
06_01_0083 - 659510-661267,661577-662384,662700-663646                 29   2.1  
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126...    29   3.6  
07_03_0544 + 19309026-19310105                                         29   3.6  
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222...    28   4.8  
10_08_1046 + 22542074-22544749,22544837-22545544                       28   6.3  
06_01_1143 - 9554338-9554983,9555004-9555746                           28   6.3  
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     27   8.4  

>05_06_0158 -
           26054487-26054672,26054770-26055018,26056003-26056611,
           26056970-26056972
          Length = 348

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 15  CGN*NLFMQFIYCIIYAFKNLLLFILVRKFLKYFSLFRYQWLFRFLPVTFFKR*LLLTCC 194
           CGN  + +    C    +  +++ IL R+ L   +     WL ++LP+    R LLL   
Sbjct: 183 CGNSGMEVCLDLCNHNGYPRIVVHILPREMLGQPTFRLAMWLLKWLPIHIVDRILLLVAR 242

Query: 195 PVIYSTSDMYL 227
            ++  TS   L
Sbjct: 243 AILGDTSQFGL 253


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 57   IYAFKNLLLFILVRKFLKYFSLFRYQWLFRFLPVTFFKR*LLLT 188
            IY F ++  F++V  FL   SLF  Q++ R L VTF    L++T
Sbjct: 949  IYPFTSI--FLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVIT 990


>11_01_0151 -
           1263237-1263406,1267405-1267646,1267681-1267781,
           1268010-1268780
          Length = 427

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = -1

Query: 419 VLRVTMSNSEPWTLQPWHLKAS---LRKSGFVVPESAIEMPPVQIKGPDPNLLDKEFYVT 249
           VL++ +SN +P     WHL+ +     KS +++  + +    V+         +++ ++ 
Sbjct: 131 VLKIRLSNQQPENFPAWHLEKTGLFTVKSAYMLAWN-LSKNAVEASSSTATSGERKLWLA 189

Query: 248 VTINKKEKVHVRCRIYHWAAGQEQLP 171
           +    K KV  + +I+ W    ++LP
Sbjct: 190 LW---KTKVQAKIKIFAWKLALDRLP 212


>07_03_0544 + 19309026-19310105
          Length = 359

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 304 GGISIALSGTTKPDLRNEALRCQGC 378
           GG + A +G   PD R EALRC  C
Sbjct: 30  GGGAAAAAGAGAPDPRAEALRCPRC 54


>09_04_0720 -
           19720844-19720975,19721582-19721809,19722108-19722290,
           19722361-19722476,19722684-19722836,19722977-19723120,
           19723257-19723380,19723548-19724479,19725245-19725422
          Length = 729

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -1

Query: 440 MDCLHRLVLRVTMSNSEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPDPN-LLDK 264
           MD   ++  ++   NS   TL+   LK  L+ +G  VPE+ IEM  ++    D N  LD 
Sbjct: 565 MDKYTQMFHKMDKDNSGNLTLED--LKLGLQINGHPVPETEIEM-LLEAGDIDGNGTLDC 621

Query: 263 EFYVTVTINKKE 228
           E +VTV ++ K+
Sbjct: 622 EEFVTVLLHIKK 633


>10_08_1046 + 22542074-22544749,22544837-22545544
          Length = 1127

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 57   IYAFKNLLLFILVRKFLKYFSLFRYQWLFRFLPVTFFKR*LLLT 188
            IY F ++  F++V  FL   SLF  Q++ + L VTF    L++T
Sbjct: 904  IYPFTSV--FLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIIT 945


>06_01_1143 - 9554338-9554983,9555004-9555746
          Length = 462

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = -1

Query: 419 VLRVTMSNSEPWTLQPWHLKASLRKSGFVVPESAIEMP------PVQIKGPDPNLLDKEF 258
           VL++ +SN +P     WHL+    K+G  + +SA  +        V+         +++ 
Sbjct: 75  VLKIRLSNQQPEDFPAWHLE----KTGLFIVKSAYRLAWNLSKNVVEASSSTATSGERKL 130

Query: 257 YVTVTINKKEKVHVRCRIYHWAAGQEQLP 171
           ++ +    K +V  + +I+ W    ++LP
Sbjct: 131 WLALW---KTRVQAKIKIFAWKLALDRLP 156


>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 306 SSANQGPRPKFTRQRILCYSNN 241
           S  + GP P F  Q++LCY+N+
Sbjct: 215 SCRSSGPIPNFPFQQLLCYNND 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,409
Number of Sequences: 37544
Number of extensions: 306929
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)