Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P10
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004517-1|AAH04517.1| 267|Homo sapiens mitochondrial ribosomal... 36 0.080
AL589765-9|CAI17171.1| 267|Homo sapiens mitochondrial ribosomal... 36 0.080
AB049636-1|BAB40841.1| 267|Homo sapiens mitochondrial ribosomal... 36 0.080
BC032944-1|AAH32944.1| 789|Homo sapiens KIAA0317 protein protein. 33 0.99
U47129-1|AAC50767.1| 245|Homo sapiens parathyroid hormone recep... 30 7.0
U25128-1|AAC50157.1| 550|Homo sapiens PTH2 parathyroid hormone ... 30 7.0
BC036811-1|AAH36811.2| 550|Homo sapiens parathyroid hormone rec... 30 7.0
AY497546-1|AAR90849.1| 550|Homo sapiens parathyroid hormone rec... 30 7.0
AC019185-1|AAY15091.1| 223|Homo sapiens unknown protein. 30 7.0
>BC004517-1|AAH04517.1| 267|Homo sapiens mitochondrial ribosomal
protein L9 protein.
Length = 267
Score = 36.3 bits (80), Expect = 0.080
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = -1
Query: 560 NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDCLHRLVLRVTMSNS 393
N +LP GLAVYA+PEN + ++ EK +E K T+ L L V M N+
Sbjct: 121 NRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKNN 179
Query: 392 EPWTLQPWHLKASLRKS-GFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVHV 216
W L P + K+ G VV +++P +P E++ VT+N + V V
Sbjct: 180 VKWELNPEIVARHFFKNLGVVVAPHTLKLP------EEPITRWGEYWCEVTVNGLDTVRV 233
>AL589765-9|CAI17171.1| 267|Homo sapiens mitochondrial ribosomal
protein L9 protein.
Length = 267
Score = 36.3 bits (80), Expect = 0.080
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = -1
Query: 560 NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDCLHRLVLRVTMSNS 393
N +LP GLAVYA+PEN + ++ EK +E K T+ L L V M N+
Sbjct: 121 NRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKNN 179
Query: 392 EPWTLQPWHLKASLRKS-GFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVHV 216
W L P + K+ G VV +++P +P E++ VT+N + V V
Sbjct: 180 VKWELNPEIVARHFFKNLGVVVAPHTLKLP------EEPITRWGEYWCEVTVNGLDTVRV 233
>AB049636-1|BAB40841.1| 267|Homo sapiens mitochondrial ribosomal
protein L9 (L9mt) protein.
Length = 267
Score = 36.3 bits (80), Expect = 0.080
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = -1
Query: 560 NFILP-GLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDCLHRLVLRVTMSNS 393
N +LP GLAVYA+PEN + ++ EK +E K T+ L L V M N+
Sbjct: 121 NRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKFLKSCRLEVGMKNN 179
Query: 392 EPWTLQPWHLKASLRKS-GFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVHV 216
W L P + K+ G VV +++P +P E++ VT+N + V V
Sbjct: 180 VKWELNPEIVARHFFKNLGVVVAPHTLKLP------AEPITRWGEYWCEVTVNGLDTVRV 233
>BC032944-1|AAH32944.1| 789|Homo sapiens KIAA0317 protein protein.
Length = 789
Score = 32.7 bits (71), Expect = 0.99
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -1
Query: 407 TMSNSEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKE 228
T +S PW L P H+ +S R+ V E E P + P+ K+ Y V+ +
Sbjct: 305 TNCSSTPWHLPPMHMTSSQRRPSTAVDEED-EDSPSECHTPEKVKKPKKVYCYVSPKQFS 363
Query: 227 KVHVRCRIYHW 195
+I HW
Sbjct: 364 VKEFYLKIIHW 374
>U47129-1|AAC50767.1| 245|Homo sapiens parathyroid hormone receptor
protein.
Length = 245
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 192 CPVIYSTSDMYLLFFVYCYCN--IKFFVE*IWV-WALDLHWR 308
C + +++ + + +YCYCN ++ V+ +W W L + W+
Sbjct: 92 CELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWK 133
>U25128-1|AAC50157.1| 550|Homo sapiens PTH2 parathyroid hormone
receptor protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 192 CPVIYSTSDMYLLFFVYCYCN--IKFFVE*IWV-WALDLHWR 308
C + +++ + + +YCYCN ++ V+ +W W L + W+
Sbjct: 397 CELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWK 438
>BC036811-1|AAH36811.2| 550|Homo sapiens parathyroid hormone
receptor 2 protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 192 CPVIYSTSDMYLLFFVYCYCN--IKFFVE*IWV-WALDLHWR 308
C + +++ + + +YCYCN ++ V+ +W W L + W+
Sbjct: 397 CELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWK 438
>AY497546-1|AAR90849.1| 550|Homo sapiens parathyroid hormone
receptor 2 precursor protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 192 CPVIYSTSDMYLLFFVYCYCN--IKFFVE*IWV-WALDLHWR 308
C + +++ + + +YCYCN ++ V+ +W W L + W+
Sbjct: 397 CELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWK 438
>AC019185-1|AAY15091.1| 223|Homo sapiens unknown protein.
Length = 223
Score = 29.9 bits (64), Expect = 7.0
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 192 CPVIYSTSDMYLLFFVYCYCN--IKFFVE*IWV-WALDLHWR 308
C + +++ + + +YCYCN ++ V+ +W W L + W+
Sbjct: 70 CELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWK 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,944,693
Number of Sequences: 237096
Number of extensions: 1964730
Number of successful extensions: 3774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3773
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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