Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P10
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical... 50 1e-06
AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine r... 30 1.4
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z83233-11|CAB05757.2| 292|Caenorhabditis elegans Hypothetical p... 28 4.3
Z81137-5|CAB03463.1| 86|Caenorhabditis elegans Hypothetical pr... 27 7.5
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 27 7.5
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z66523-3|CAA91412.1| 397|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF067211-12|AAK66018.2| 276|Caenorhabditis elegans Hypothetical
protein B0205.11 protein.
Length = 276
Score = 50.0 bits (114), Expect = 1e-06
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Frame = -1
Query: 569 AYXNFILPGLAVYANPENLEKYKTYEKRPLEE--NTHSSPFVKRTMDC-LHRLVLRVTMS 399
A + +L AVYA+P +L+ Y + R EE + P+ + + L ++V+ + ++
Sbjct: 91 ARKDLLLSKKAVYASPFDLKYYSDMKTRMAEELASRIRIPYELKVVGRDLQKMVIPIKVN 150
Query: 398 NSEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVH 219
WT+ +K+SLR+ G V E+ I + I GP+ ++ K F V +N++ V
Sbjct: 151 MENQWTIDRNLVKSSLRQMGVFVAENTIFLAAKPISGPNFDIEAKLFRFYVVVNQQYIVP 210
Query: 218 VRCRIYH 198
+ RI H
Sbjct: 211 MLGRITH 217
>AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein49 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 3 RKSVCGN*NLFMQF--IYCIIYAFKNLLLFILVRKFLKYFSLFRYQWLFRFLPVTFFKR* 176
+ S GN + F ++ +IY+ N L+ I + + F LF F P F
Sbjct: 33 KSSQFGNYRFLLLFFAVFNMIYSVMNFLIQIDIHSYRYCFFLFLKNNWFPQSPQLNFH-- 90
Query: 177 LLLTCCPVIYSTSDMYLLFFVYCY 248
LLL C ++ ++ + L+ F+Y Y
Sbjct: 91 LLLARCSMLAASYGVLLIHFIYRY 114
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 458 PFVKRTMDCLHRLVLRVTMSN-SEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPD 282
PF K T +H+ + + N S T P K+S KS P A+ PPV +K P+
Sbjct: 255 PFQKETTCYIHQKLCKSRFVNVSTTDTPIPKSSKSSPGKS---TPTFALPSPPVPLKSPE 311
Query: 281 P 279
P
Sbjct: 312 P 312
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 458 PFVKRTMDCLHRLVLRVTMSN-SEPWTLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPD 282
PF K T +H+ + + N S T P K+S KS P A+ PPV +K P+
Sbjct: 258 PFQKETTCYIHQKLCKSRFVNVSTTDTPIPKSSKSSPGKS---TPTFALPSPPVPLKSPE 314
Query: 281 P 279
P
Sbjct: 315 P 315
>Z83233-11|CAB05757.2| 292|Caenorhabditis elegans Hypothetical
protein K06B4.9 protein.
Length = 292
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 IYAFKNLL-LFILVRKFLKYFSLFRYQWLFRFLPVTFFKR*LLLTC---CPVIYSTSDMY 224
IY NL L I + +F F RY+ LF + L +TC C V Y S +
Sbjct: 86 IYEISNLSHLLIALNRFCVLFFQHRYEQLFSNPNTVIMRNYLWITCIIFCAVCYEFSKCF 145
Query: 225 LLF 233
L +
Sbjct: 146 LKY 148
>Z81137-5|CAB03463.1| 86|Caenorhabditis elegans Hypothetical
protein W02D9.6 protein.
Length = 86
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 182 EQLPFEESYWKKPKQPLIPEQAEVLQKF 99
E+L FEE+YW + PE E+ Q F
Sbjct: 25 EKLEFEEAYWPELYTTRGPEDDEIYQPF 52
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 42 FIYCIIYAFKNLLLFIL-VRKFLKYFS-LFRYQWL 140
FI C+I+ N+LL +L V++F Y+S F +W+
Sbjct: 104 FISCVIFPVFNILLTLLAVQRFFIYYSDRFGKKWI 138
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 377 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPDP 279
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 223 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 253
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 377 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPDP 279
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 223 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 253
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 377 QPWHLKASLRKSGFVVPESAIEMPPVQIKGPDP 279
QP+ + S ++G VP++ I +PP QI P P
Sbjct: 217 QPYPVFPSYSRAG--VPQTPIPLPPTQINTPYP 247
>Z66523-3|CAA91412.1| 397|Caenorhabditis elegans Hypothetical
protein M05D6.3 protein.
Length = 397
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 383 TLQPWHLKASLRKSGFVVPESAIEMPPVQIKGPDPNLLD--KEFYVTVTINKKEKVHVRC 210
+L+ LKA + + + S + P + I+ D + K F +TVT K++ V
Sbjct: 195 SLEECELKAKICRKFWPEKRSKKDFPTLSIQASDDHSETHMKTFNLTVTEKKQDHQTVLM 254
Query: 209 RIYHWA 192
Y WA
Sbjct: 255 HFYEWA 260
>Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical
protein F35G12.12 protein.
Length = 491
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +2
Query: 401 SLLHEVLICVNNPLSFSQMESCEY------FLLEDVFHRFYIFPNFLDW 529
+L H + V P F +M++C Y F V H+F F F+DW
Sbjct: 380 ALTHVAVGNVKKP--FPEMKNCIYDFWQQLFTYPSVVHQFITFQGFIDW 426
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 48 YCIIYAFKNLL-LFILVRKFLKYFSLFRYQWLFRF 149
+ + AF +++ LF+L L +S F + W FR+
Sbjct: 61 FLAVLAFADIIFLFLLFPNILANYSFFTFNWYFRW 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,065
Number of Sequences: 27780
Number of extensions: 303833
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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