Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P10
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 329 PESAIEMPPVQIKGPDPNLLDKEFYVTVTIN 237
           P+ A   PP    GPD   LDK F +    N
Sbjct: 339 PKPAPPPPPPSSSGPDSAKLDKIFDIATKEN 369


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 316 IALSGTTKPDLRNEALRCQGCRVHGSELLIVTRS 417
           + LS  T+P   N     Q   VH   L++ T S
Sbjct: 11  LLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTS 44


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 316 IALSGTTKPDLRNEALRCQGCRVHGSELLIVTRS 417
           + LS  T+P   N     Q   VH   L++ T S
Sbjct: 11  LLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTS 44


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 344 SGFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVHVRCRIY 201
           +G ++ E   +  P  IK     L  K F   +TIN  + +    RI+
Sbjct: 472 NGLLLEEQRNDDKPFLIKIRQYRLNHKPFNFHITINADKPMKAAIRIF 519


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 344 SGFVVPESAIEMPPVQIKGPDPNLLDKEFYVTVTINKKEKVHVRCRIY 201
           +G ++ E   +  P  IK     L  K F   +TIN  + +    RI+
Sbjct: 472 NGLLLEEQRNDDKPFLIKIRQYRLNHKPFNFHITINADKPMKAAIRIF 519


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 79  YYSFW*GNF*STSACSGISGCLGFF 153
           YY  + GNF S S    ++  +GFF
Sbjct: 210 YYGHFAGNFSSISITFKLAREMGFF 234


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 257 YVTVTINKKEKVHVRCRIYH 198
           Y+T  I K  K+H  C +++
Sbjct: 314 YITPLIQKHLKIHDTCGVHN 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,903
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)