Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P09
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 95 7e-21
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 57 2e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 49 6e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 47 2e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 44 2e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 2e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 32 0.059
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.10
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.14
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 0.73
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 1.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.2
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 3.0
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.9
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 26 5.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.8
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 25 6.8
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 95.1 bits (226), Expect = 7e-21
Identities = 40/76 (52%), Positives = 62/76 (81%)
Frame = -1
Query: 386 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 207
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 206 VIRGNSIIMLESLDRL 159
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Frame = -1
Query: 365 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMV 207
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 206 VIRGNSIIMLESLD 165
V+RG +++++ +D
Sbjct: 87 VVRGTTLVLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 48.8 bits (111), Expect = 6e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = -1
Query: 362 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 186
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 185 IMLESLD 165
+ + +LD
Sbjct: 68 LYVSALD 74
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = -1
Query: 362 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 192
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 191 SIIMLESLD 165
++++L LD
Sbjct: 76 NVVLLGELD 84
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/45 (33%), Positives = 33/45 (73%)
Frame = -1
Query: 302 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 168
G +RGFD FMN+VLD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = -1
Query: 362 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 195
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 194 NSIIML 177
++ M+
Sbjct: 63 ENVAMV 68
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 32.3 bits (70), Expect = 0.059
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = -1
Query: 365 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV---------- 216
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 215 --GMVVIRGNSIIML 177
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 344 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 168
+ + ++L G G L D +MNL L E + DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 167 DRL 159
D +
Sbjct: 73 DEV 75
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 362 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 186
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 185 IML 177
ML
Sbjct: 71 CML 73
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 377 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 246
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 359 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 258
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 265 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 357
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 163 DFSRLRVGK-KYHQCCKCASLFINK*I*NS 77
D + R GK K +QC C+ FIN+ I NS
Sbjct: 351 DLWKKRHGKRKVYQCSNCSQTFINEDIQNS 380
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 171 RFQHYNTVTTNYHHPNIVTL 230
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 108 EAHLQHW*YFLPTLSLLK--SV*RFQHYNTV 194
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 432 VVDFCILDEFPTHRILSMNLTFLLYSTVSSAGRIHLNSL**VVLNTYWP 578
++D C+ + + N+ + + ++ + RIH + VVL+ YWP
Sbjct: 339 LMDLCLRYCYSQSNEIGTNVLWSMTTSFINIWRIHPGTCCCVVLSIYWP 387
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 178 WNL*TDFSRLRVGKKYHQCCKCASLFI 98
WNL TD L H C KC SLFI
Sbjct: 39 WNLETDPKTL-----LHGCSKCGSLFI 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,703
Number of Sequences: 5004
Number of extensions: 48522
Number of successful extensions: 147
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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