Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P07
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    31   0.85 
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063...    29   3.4  
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301...    29   4.5  
03_02_0339 - 7623897-7625837                                           28   6.0  

>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 255 HTLLKCVHIYKKHKVQYEIRTYFRFIHMQRLTGSTCDTYLEYIERNLPEGCALKV 91
           + +L   H++K  +  +EIRT+ R I +   T  T D+ ++     LP G  ++V
Sbjct: 378 YCVLNSPHVHKDSRFHFEIRTHQRLIDIMYPTAQTIDSLMQL---QLPAGVDVEV 429


>01_06_1350 +
           36505926-36505978,36506081-36506176,36506255-36506329,
           36506964-36507038,36507132-36507348,36507442-36507685,
           36508250-36508707,36508786-36509067,36509171-36509872
          Length = 733

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 259 KAHTFKMCTHLQETQSAVRNSYILQ----VYSYAETHWIYVRHIFGIYRK 122
           K HTFK   H   TQ+     ++      +  Y     +Y+RHI+ I RK
Sbjct: 293 KCHTFKKAFHKVLTQTLTEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRK 342


>04_03_0540 +
           16929782-16929834,16929937-16930032,16930111-16930185,
           16930819-16930893,16930987-16931209,16931303-16931546,
           16932111-16932568,16932647-16932928,16933032-16933733
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 259 KAHTFKMCTHLQETQSAVRNSYILQ----VYSYAETHWIYVRHIFGIYRK 122
           K HTFK   H   TQ+     ++      +  Y     +Y+RHI+ I RK
Sbjct: 295 KRHTFKKAFHKVLTQTLTEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRK 344


>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 378 LILLFYITCPVPQEEPLVQQHEVAPLYW 461
           LILL YI   VP+ E L Q   +A L W
Sbjct: 586 LILLCYIALHVPENEELAQAGVLAVLLW 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,012
Number of Sequences: 37544
Number of extensions: 278335
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)