Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P07
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-15|CAA21535.1|  156|Caenorhabditis elegans Hypothetical...    87   1e-17
AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O s...    30   1.8  
AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan sulph...    30   1.8  
L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AL032626-15|CAA21535.1|  156|Caenorhabditis elegans Hypothetical
           protein Y37D8A.18 protein.
          Length = 156

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 47/114 (41%), Positives = 65/114 (57%)
 Frame = -1

Query: 405 DKLYKRVELEMRGIDPAVLLSYSWFCVAAASHLGIEVTKSWALRKAEKERHTLLKCVHIY 226
           DKLY  VE+E RG D AVL SY+ F      HL I   +   L      +  L +   ++
Sbjct: 38  DKLYSSVEIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPAL-RSKFVH 96

Query: 225 KKHKVQYEIRTYFRFIHMQRLTGSTCDTYLEYIERNLPEGCALKVTKIECQKLP 64
           KK+K+ YE RT+   + +  +TGST  T+LEYI+RN+PEG  ++V   E Q LP
Sbjct: 97  KKYKLHYETRTHISKLEILNVTGSTASTFLEYIQRNIPEGVGMRVGFTELQPLP 150


>AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O
           sulfotransferase HST-6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 183 FIHMQRLTGSTCDTYLEYIERNLPEGCALKVTKIEC 76
           F+H+Q+  G+T + +L   ++NLP  C     +  C
Sbjct: 83  FVHIQKTAGTTFEKFLVRYQQNLPCKCQAHKKRCNC 118


>AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan
           sulphotransferase protein 6 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 183 FIHMQRLTGSTCDTYLEYIERNLPEGCALKVTKIEC 76
           F+H+Q+  G+T + +L   ++NLP  C     +  C
Sbjct: 83  FVHIQKTAGTTFEKFLVRYQQNLPCKCQAHKKRCNC 118


>L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical
           protein ZK688.10 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 152 VDPVSLCI*INLKYVRISYCTLCFL*MCTHF 244
           +DPV +C+   L  +  S C L  L +C HF
Sbjct: 192 IDPVVMCVLSILYLIYNSVCLLAVLHLCAHF 222


>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 YNLISIVLS*FCRVGIFNILIYFRFH 628
           ++ +S+ L  FC   IFN+L+Y+  H
Sbjct: 162 FDFLSLNLVGFCAYAIFNLLMYYNSH 187


>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 YNLISIVLS*FCRVGIFNILIYFRFH 628
           ++ +S+ L  FC   IFN+L+Y+  H
Sbjct: 162 FDFLSLNLVGFCAYAIFNLLMYYNSH 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,348
Number of Sequences: 27780
Number of extensions: 278107
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)