Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P06
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   7.9  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 244  SICKKIYTAVLHKKHIFLCKNCKGI 170
            S+ K++    +  K + LCK CK +
Sbjct: 958  SVLKRVLDGPMRTKFLLLCKRCKAV 982


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 359 LLYILLVIACLTTYIKSS 306
           ++YI+L++ C T Y  SS
Sbjct: 197 MIYIILIVTCYTVYCSSS 214


>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 417 TVIIKNWLCSLIIPFACILFIVHS 346
           T I KNW  + ++P AC  FI +S
Sbjct: 9   TSISKNWWSASLVPVACGWFIGNS 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,200
Number of Sequences: 5004
Number of extensions: 53819
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)