Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P05
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   4.3  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.7  

>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 225 LQVLNTKKGNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEFNL 374
           ++V+   KGN +I+N  YD           + +   +R+ +IGE ++F++
Sbjct: 105 MEVVEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEIGEKVDFSM 154


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 333 ERIFQIGEFLEFNLFTCTRNIS----TNVKVKTTKCSLPFSYIN 452
           +RIF+ G  + F     TR +     T+++   + C+L  +Y+N
Sbjct: 820 KRIFKDGRVIVFQQLDFTRTVGVLLGTSIRTNASDCTLEVAYLN 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,139
Number of Sequences: 5004
Number of extensions: 71935
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)