Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P05
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.1  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 727 CYPCRFAS*KLSHSTLQWDNSNRVMVWLLKE 635
           C PC     K++   +Q+   N+  +W+L E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 727 CYPCRFAS*KLSHSTLQWDNSNRVMVWLLKE 635
           C PC     K++   +Q+   N+  +W+L E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 381 CTRNISTNVKVKTTKCSLPFSYINAFSFNT 470
           C   +ST +   T + + PF  +  F+  T
Sbjct: 77  CVEKVSTTIVPTTQEINKPFKRLELFNITT 106


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 254 IAFLGI*DLQPMFQE---GCC*LFYP*HIHVIRLFVIYLFFRMLSLQLSLLW 108
           I  LG+  + P+F+      C L    +I+ I +    LF+ ++SL++ L W
Sbjct: 85  IGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 254 IAFLGI*DLQPMFQE---GCC*LFYP*HIHVIRLFVIYLFFRMLSLQLSLLW 108
           I  LG+  + P+F+      C L    +I+ I +    LF+ ++SL++ L W
Sbjct: 138 IGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 564 FQNIITIKLCLQVIKMFHGS 623
           FQN++ +K    V+ +F+GS
Sbjct: 10  FQNVVLVKKVKIVLLIFYGS 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,676
Number of Sequences: 438
Number of extensions: 5112
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)