Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P04
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   2.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.6  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   3.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   4.6  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   8.1  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   8.1  

>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 482 NLGHAKVKQLSNSPRSPYCILNIFSW*FFSRSTCWMDSSTHCGCKTKQMASKWYICSVCL 661
           N  H+     SN P S      + +  F S   CW   + H GC+T  M +       C+
Sbjct: 276 NYDHSSSPGKSNYPPSLCTERKVLNKIFDSLLGCWPSPTRHVGCRTFFMVTVSRFLPTCV 335

Query: 662 L 664
           +
Sbjct: 336 I 336


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 418 PDPSLYGRGPSTKNASDHTFLF 353
           P+P+L    P+T+ AS++T+L+
Sbjct: 174 PEPALLPEAPNTREASNNTYLY 195


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 207 TKGPSGLDGKFQSGSELD--FYIDNDMIHIADTKVAH 103
           +KG SGLD +   GS+ D   ++D        TKVAH
Sbjct: 524 SKGSSGLDVREHEGSDDDAEVFVDRSPESFGATKVAH 560


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 693 SSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQVLREKNYH 556
           +S +   D+  +Q +Q Y+   +CL  H + V+++     R  N H
Sbjct: 307 ASEAEHKDEPEQQRKQFYNF-ELCLAYHAKPVEDATSTSARASNLH 351


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 73  QLADEKVTIAMSHFRICDMNHIVVDVEIQLR-TTLEFSIETTGAFSPNYVLHF 228
           +L+   V  A   F + ++   + +V  +LR +T ++  E T AF+PN   HF
Sbjct: 395 ELSTFLVNEANVRFMVRELLSFLDNVSDELRGSTAQYITEVTNAFAPNKRWHF 447


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 594 ESIQQVLREKNY-HEKMFKMQYGDLGEFESCFTFACPKFLSA 472
           E++ +  +++N  HEK+ +    +L E  S F FA   F+SA
Sbjct: 228 ENLLRKEKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISA 269


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 207 TKGPSGLDGKFQSGSELDFYIDND 136
           T GP G+D   QS S  D  + ND
Sbjct: 39  TLGPKGMDKILQSNSSGDIVVTND 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,810
Number of Sequences: 5004
Number of extensions: 68923
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)