Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_P04
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 158 3e-39
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 158 3e-39
U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical pr... 32 0.35
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 32 0.35
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 2.5
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 3.3
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 3.3
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 3.3
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 158 bits (384), Expect = 3e-39
Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 1/214 (0%)
Frame = -2
Query: 693 SSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEF 514
S +++Q D I K +Q++HLLAICL + PQ +DESI L E+ E+M M G++ EF
Sbjct: 323 SKKNFQYDVIGKTWDQLFHLLAICLAIQPQRIDESIASQLSER-CGERMMHMANGNIDEF 381
Query: 513 ESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTL 334
+ F CPKFLS E G N ++ + QTQ F++ + Q LP +R YLKLYTTL
Sbjct: 382 RNAFATGCPKFLSPTTVVYE-GVNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTL 440
Query: 333 PMAKLAAFMSAARGSERDAAREHAALAI-HLLCFKHKMKNVVWTKGPSGLDGKFQSGSEL 157
P KLA+FM D EH I LL +K + + GPS D + +++
Sbjct: 441 PTKKLASFM--------DVDDEHYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDI 491
Query: 156 DFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEEL 55
DFY+D DMI+IADTKVA G+ FIR + K +E+
Sbjct: 492 DFYVDRDMINIADTKVARHVGEHFIRHIQKLQEV 525
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 158 bits (384), Expect = 3e-39
Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 1/214 (0%)
Frame = -2
Query: 693 SSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQVLREKNYHEKMFKMQYGDLGEF 514
S +++Q D I K +Q++HLLAICL + PQ +DESI L E+ E+M M G++ EF
Sbjct: 321 SKKNFQYDVIGKTWDQLFHLLAICLAIQPQRIDESIASQLSER-CGERMMHMANGNIDEF 379
Query: 513 ESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTTL 334
+ F CPKFLS E G N ++ + QTQ F++ + Q LP +R YLKLYTTL
Sbjct: 380 RNAFATGCPKFLSPTTVVYE-GVNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTTL 438
Query: 333 PMAKLAAFMSAARGSERDAAREHAALAI-HLLCFKHKMKNVVWTKGPSGLDGKFQSGSEL 157
P KLA+FM D EH I LL +K + + GPS D + +++
Sbjct: 439 PTKKLASFM--------DVDDEHYDSFIGKLLTYKMIVNELGKEAGPSSADDD-EPQTDI 489
Query: 156 DFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEEL 55
DFY+D DMI+IADTKVA G+ FIR + K +E+
Sbjct: 490 DFYVDRDMINIADTKVARHVGEHFIRHIQKLQEV 523
>U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical
protein F56A3.2 protein.
Length = 443
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 488 PNSYRRVPRPLNPVPTMAVMLSNTRPKSLWTRSVNKKCFRPYVPI*NYTPPSR 330
P VP + P ++ + PKS+ RSV+ CF P V N P ++
Sbjct: 56 PEDTDTVPLTIPSTPALSGKFDSKTPKSVRRRSVSMSCFTPIVETINQPPTNQ 108
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 32.3 bits (70), Expect = 0.35
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Frame = -2
Query: 567 KNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVR 388
K+ HEK ++ + + + A PKF S P + G + ++ T +D
Sbjct: 2126 KSSHEK--RLAHSESSSWRKSLARA-PKFDSKDPKGAKQGEAFEGTLIRKHTYESLDRKA 2182
Query: 387 QQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKN 217
RS+ KLY L +L+ + E AL ++++ K KN
Sbjct: 2183 AN------RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKN 2236
Query: 216 VVWTKGPSGLDGKFQSGSELD 154
V+ + P G + FQ GSE D
Sbjct: 2237 VLSLRLPIGAEYLFQCGSEED 2257
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 29.5 bits (63), Expect = 2.5
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 3/141 (2%)
Frame = -2
Query: 567 KNYHEKMFKMQYGDLGEFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVR 388
K+ HEK ++ + + + A KF S P + G + ++ T +D
Sbjct: 2126 KSSHEK--RLAHSESSSWRKSLARAA-KFDSKDPKGAKQGEAFEGTLIRKHTYESLDRKA 2182
Query: 387 QQKMLPTIRSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKN 217
RS+ KLY L +L+ + E AL ++++ K KN
Sbjct: 2183 AN------RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKN 2236
Query: 216 VVWTKGPSGLDGKFQSGSELD 154
V+ + P G + FQ GSE D
Sbjct: 2237 VLSLRLPIGAEYLFQCGSEED 2257
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 363 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 193
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 192 GLDGKFQSGSELD 154
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 363 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 193
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 192 GLDGKFQSGSELD 154
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 363 RSYLKLYTTLPMAKLAAFMSAARGSERDAAREHAAL---AIHLLCFKHKMKNVVWTKGPS 193
RS+ KLY L +L+ + E AL ++++ K KNV+ + P
Sbjct: 2140 RSWEKLYAVLRQNELSFYKDPKHRDESVHGEPPMALPGCSVNVASDYQKKKNVLSLRLPI 2199
Query: 192 GLDGKFQSGSELD 154
G + FQ GSE D
Sbjct: 2200 GAEYLFQCGSEED 2212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,056
Number of Sequences: 27780
Number of extensions: 408857
Number of successful extensions: 1184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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