Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_P02
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    53   4e-08
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    34   0.017
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   4.6  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.1  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   8.1  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 25/70 (35%), Positives = 41/70 (58%)
 Frame = -3

Query: 704 LFXGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGD 525
           LF G  IF  EGI ++LP++  MAKP++    P +L   M+ + LL++ +G L Y  +G 
Sbjct: 459 LFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGS 515

Query: 524 QAMGSITLNL 495
           +    + LN+
Sbjct: 516 KVKTVVILNM 525


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
 Frame = -3

Query: 605 GVLNLTMSVVV----LLYMIMGFLGYVKYGDQAMGSITLNLDTGEXXXXXXXXXXXXXXX 438
           G +N TM   +    LLY+++   GY+ +G  A G+I    D                  
Sbjct: 235 GFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVL 294

Query: 437 FTYTLQFYVPMEIVWRN-TKDHVAQKYHNITEAVMRXXXXXXXXXXXXXLPSLEQVIGLE 261
           F+Y LQ +     V++   + + A    +   AV+              L SLE V+   
Sbjct: 295 FSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFV 354

Query: 260 GAFFYSFLGLIAPSILDLIF 201
           G+   +F+  I P  L   F
Sbjct: 355 GSTGSTFISFILPGSLYYFF 374


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 460 IFAIRAGISPVSKFRVILPIAWSPYLTYPR 549
           I ++   ISP   F  ILP  WS + T PR
Sbjct: 235 ISSVPKDISPQKYFSCILPQVWSLFSTQPR 264


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -3

Query: 287 SLEQVIGLEGAFFYSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVAGV 108
           S  Q +GL   FF SF  L+  +  +    + R +  N  ++    ++ F+  F  +A V
Sbjct: 188 STAQTVGLNTGFFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGYIKFWAYFTFIASV 247


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +1

Query: 637 IVFSTGSTTPIPSIAKI 687
           +VFST STTP+P+++ +
Sbjct: 452 LVFSTTSTTPLPALSHL 468


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 206  IFKWERGLGRNNWILFKDLFLIFFGCFVLVAGVTQSIRE 90
            IF W +G  + + +    +++  FG F L+AGV   + E
Sbjct: 929  IFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGVYYILSE 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,288
Number of Sequences: 5004
Number of extensions: 54854
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)