Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_O24
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0826 + 11569961-11570301,11572220-11572454 95 5e-20
10_08_0543 - 18649894-18650233,18651446-18651981 91 6e-19
02_05_0089 - 25715637-25716333,25716481-25717238 91 6e-19
02_05_1047 + 33745656-33745964 89 3e-18
10_08_0544 - 18655186-18655567,18656835-18657151 89 5e-18
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 34 0.019
08_01_0618 - 5394841-5395036,5395179-5395244,5395727-5395769,539... 29 5.2
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 29 5.2
11_02_0038 - 7631462-7634428,7635975-7636250 28 6.8
09_05_0012 - 20063456-20064601 28 6.8
04_01_0050 - 536390-537231,538108-538375 28 6.8
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 28 6.8
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 95.1 bits (226), Expect = 5e-20
Identities = 44/109 (40%), Positives = 66/109 (60%)
Frame = -1
Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
++T+ +L YDG P +L+A+ G ++DVTRG+ FYGP GP S FAG+DATR LA +
Sbjct: 81 EITLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALAL--M 138
Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKLGETPXNY 161
+ D D+ G DE+ ++WE++F+E+Y VG L N+
Sbjct: 139 SFDPIDLTGDLDGLGPDELEVLQDWEDKFKERYPTVGHLASENAADGNH 187
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/102 (41%), Positives = 68/102 (66%)
Frame = -1
Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
++T EL +YDG+ P+ +L+A+ G I+DV++ + FYGPGGP + FAGKDA+R LA ++
Sbjct: 146 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA--KM 203
Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKL 182
+ D DD+S E+++ ++WE +F KY VG + K+
Sbjct: 204 SFEPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTIKKV 245
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 91.5 bits (217), Expect = 6e-19
Identities = 44/102 (43%), Positives = 67/102 (65%)
Frame = -1
Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
++T EL+ YDG+ P+ +L+A+ G I+DVT+ + FYGPGGP + FAG+DA+R LA ++
Sbjct: 220 EVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA--KM 277
Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKL 182
+ +D DVS G E+ + EWE +F KY VG + K+
Sbjct: 278 SFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTIKKI 319
>02_05_1047 + 33745656-33745964
Length = 102
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/99 (39%), Positives = 63/99 (63%)
Frame = -1
Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
+LT A+L+ YDG+ P + ++V G ++DVT G+ FYGPGG + FAG++A+R L G++
Sbjct: 4 ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL--GKM 61
Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRL 191
+ + D D+S E+ +WE +F+ KY +V RL
Sbjct: 62 SKDDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARL 100
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 88.6 bits (210), Expect = 5e-18
Identities = 42/101 (41%), Positives = 66/101 (65%)
Frame = -1
Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
+++ EL++YDG+ P +L+A+ G I+DVT+ + FYGPGGP + FAGKDA+R LA ++
Sbjct: 73 EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KM 130
Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLK 185
+ D D+S G E+ + ++WE +F KY VG + K
Sbjct: 131 SFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVGTVKK 171
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 34.3 bits (75), Expect(2) = 0.019
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 409 IFDVTRGKRFYGPGGPXSAFAG 344
+FDVT+GK YGPGG FAG
Sbjct: 52 VFDVTKGKSNYGPGGGYHHFAG 73
Score = 21.4 bits (43), Expect(2) = 0.019
Identities = 10/51 (19%), Positives = 26/51 (50%)
Frame = -1
Query: 340 DATRGLATGQVAASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLL 188
D+ +GL++ + A + + S ++ S +W + + E+Y G+++
Sbjct: 105 DSLQGLSSMEYYACVFSKKGIIGFVTSFQVNSIVDWRKFYFERYIFAGKIV 155
>08_01_0618 -
5394841-5395036,5395179-5395244,5395727-5395769,
5396119-5396238,5396653-5396731,5396910-5397177,
5397262-5397305,5397431-5397502,5397756-5397825,
5397929-5397999
Length = 342
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 292 DEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKLGET 173
DE+D SD G DE E E++ RE+ I RL+ G+T
Sbjct: 62 DEFD--SDFGEDESEPDDEPEKEVRERLPIKKRLIFPGKT 99
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 338 VFTSKRRXWASRSIKSLASSNIKYNSIHSQKNSSVRLS 451
+F S RR W S+++ +LAS Y+S+ VR++
Sbjct: 218 LFLSSRRAWISQALTTLASDLTSYSSVLCDVAKIVRVT 255
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 679 SRTQHVYXMADETNSPTVWDELTSPLNL 596
+ T+ Y M D TN V+DEL P NL
Sbjct: 804 THTKESYTMEDITNIENVFDELKPPCNL 831
>09_05_0012 - 20063456-20064601
Length = 381
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 391 GKRFYGPGGPXSAFAGKDATRGLATGQVAASENDEYDDVSDXGSDE 254
G Y G A +TG E+DEY+ ++D SDE
Sbjct: 335 GASSYNVGQNPGVHEASAADHAASTGGGGGGEDDEYEGMTDSSSDE 380
>04_01_0050 - 536390-537231,538108-538375
Length = 369
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 283 DDVSDXGSDEIASAKEWEEQ 224
DDV GSD AS EWEE+
Sbjct: 333 DDVDSSGSDVYASLCEWEEE 352
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 379 YGPGGPXSAFAGKDATRGLATGQVAASENDEYDDVSDXGSDEIASAKEWEEQFREK 212
+G GG G D + ++ E++ DD + SDE +E EE+ E+
Sbjct: 411 HGNGGIRGEGGGTDDVAEIEEEELGTDEDETSDDSDENFSDEEGDEEELEEEEEEE 466
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,837
Number of Sequences: 37544
Number of extensions: 262716
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -