Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O24
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...   100   1e-21
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...   100   1e-21
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    61   9e-10
AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   8.0  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score =  100 bits (239), Expect = 1e-21
 Identities = 52/109 (47%), Positives = 67/109 (61%)
 Frame = -1

Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG      AG DATR L T   
Sbjct: 49  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 107

Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKLGETPXNY 161
            A  + E+DD +   +DE  +A EWE QF+ KY  VGRL+K      +Y
Sbjct: 108 NA-VSSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADY 155


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score =  100 bits (239), Expect = 1e-21
 Identities = 52/109 (47%), Positives = 67/109 (61%)
 Frame = -1

Query: 487 DLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQV 308
           D+TV EL+KYDG + +  +L  +NG I+DVTRGK FYGPG      AG DATR L T   
Sbjct: 64  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 122

Query: 307 AASENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVGRLLKLGETPXNY 161
            A  + E+DD +   +DE  +A EWE QF+ KY  VGRL+K      +Y
Sbjct: 123 NA-VSSEWDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADY 170


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 31/95 (32%), Positives = 49/95 (51%)
 Frame = -1

Query: 481 TVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPXSAFAGKDATRGLATGQVAA 302
           T  +L  +DGT+    + LA+ G +++V   K +YGPG     FAG+DATR   TG    
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF-- 159

Query: 301 SENDEYDDVSDXGSDEIASAKEWEEQFREKYDIVG 197
            E+           DE+ S ++W   + ++Y +VG
Sbjct: 160 QESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVG 194


>AC025727-4|AAG23388.3|  463|Caenorhabditis elegans Hypothetical
           protein Y73E7A.2 protein.
          Length = 463

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 328 GLATGQVAASENDEYDDVSDXGSDE--IASAKEWEEQFREKYDIVGRLLKLG 179
           G   G+ A  + ++ DDV +  SDE  ++  ++ EE+  E+ +I G+  K+G
Sbjct: 218 GEGKGKAAGEDEEDDDDVEEIPSDEEILSDFEDDEEEPAEELEIPGKSRKIG 269


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 310 VAASENDEYDDVSDXGSDEIASAKEWEEQFREKY 209
           +A  E +  +D+SD   D+  +A+E  E+ RE+Y
Sbjct: 267 LADEEEENSNDISDIDDDDGITAEEQREEERERY 300


>Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 NDEYDDVSDXGSDEIASAKEWEEQFREK 212
           +D +D   + G D   SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197


>Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 NDEYDDVSDXGSDEIASAKEWEEQFREK 212
           +D +D   + G D   SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197


>Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 NDEYDDVSDXGSDEIASAKEWEEQFREK 212
           +D +D   + G D   SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197


>Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 NDEYDDVSDXGSDEIASAKEWEEQFREK 212
           +D +D   + G D   SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 295  NDEYDDVSDXGSDEIASAKEWEEQFREKYDI 203
            +D  DDV     D  ASAK+W   F +K ++
Sbjct: 969  DDTKDDVISFRVDNSASAKKWSAAFADKLEL 999


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,637
Number of Sequences: 27780
Number of extensions: 228595
Number of successful extensions: 524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)