Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_O23
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 236 1e-63
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 236 1e-63
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 148 5e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 148 5e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 148 5e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 88 7e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 40 3e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 8e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 38 0.001
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 4.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.4
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 5.8
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 236 bits (578), Expect = 1e-63
Identities = 111/126 (88%), Positives = 115/126 (91%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 234 IQKESTLHLVLRLRGGTIEPSLRILAMKYXCEXMICRKCYARLHPRATNCRKTKCGHTNN 55
IQKESTLHLVLRLRGG IEPSL+ LA KY CE ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 54 LRPKKK 37
LRPKKK
Sbjct: 121 LRPKKK 126
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 236 bits (578), Expect = 1e-63
Identities = 111/126 (88%), Positives = 115/126 (91%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 234 IQKESTLHLVLRLRGGTIEPSLRILAMKYXCEXMICRKCYARLHPRATNCRKTKCGHTNN 55
IQKESTLHLVLRLRGG IEPSL+ LA KY CE ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 54 LRPKKK 37
LRPKKK
Sbjct: 121 LRPKKK 126
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 148 bits (358), Expect = 5e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQ R IFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 234 IQKESTLHLVLRLRGG 187
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 87.8 bits (208), Expect = 7e-19
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
M I VKTLTGK I L+++ +D + +K ++++KEGIPP Q R I+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 234 IQKESTLHLVLRLRGGT 184
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = -2
Query: 384 KTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYNIQKES-TLHL 208
K + +V A I +K KIQ ++ ++ + I++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 207 VLRLRGGTIEP 175
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 8e-04
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = -2
Query: 414 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYN 235
+ + +K + + V++ ++ +K I I ++ R I+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 234 IQKESTLHLVLRL 196
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -2
Query: 387 GKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSDYNIQKESTL 214
GK LE+E ++T +K ++ +PP++ + I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 4.4
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 411 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQXRXIFAGKQLEDGRTLSD--Y 238
+I V T+ K +V + T+ +K I P D+ + I AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 237 NIQKESTLHLVLRLRGGT 184
+ T HLV+ + T
Sbjct: 65 DATDLVTFHLVIAVFNST 82
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 334 FDIFDSVGSFHLQCNGLPRKGFDEYLHCVAPMKNV 438
F ++S+G + L C + FDEYL+ A ++NV
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 340 IFDSVGSFHLQCNGLPRKGFDEYL 411
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 329 LALTFSIVSEASTSNVMVFPVRVLTNICIVLLL 427
L TF++ STS++++ R L N+ I++++
Sbjct: 4 LDYTFNVSDATSTSSIIIVSRRELANLRIMVII 36
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 447 LSKHVFHRSNTMQIFVKTLTGKTITLE-VEASDTIENVKAKIQDKEGIPP 301
LSK VF+ + + T+ G +++E V+ ++ N + + +PP
Sbjct: 346 LSKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,872
Number of Sequences: 5004
Number of extensions: 38376
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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