Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O20
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.0  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   3.4  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.5  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = -2

Query: 462 PADATLRTFKGTPIK*NIVQQNVSSTRPNYW*THCSFKSTGSTIPCSTHSPTTGGGSCNP 283
           P  A   +F GT     IV  N S+ RP     H   +STGS    S+ S  + GGS NP
Sbjct: 229 PTHAANPSFPGT-----IVTHNTSNFRPEGG-GHRHRRSTGSLSVGSSGSGFSSGGSGNP 282


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 SGRALVFYEYFRELVDKECSSQ 211
           SG  L+FYE  R++  KEC  +
Sbjct: 189 SGFQLLFYEKLRQVAQKECGQK 210


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 311 LQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNT 198
           L R+E+  I+Y T+ +  + E+ C+  G+ N++ GT++
Sbjct: 776 LIRIELD-IKYATSFYDELNEKWCSEEGEYNVLVGTSS 812


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 494  VLNTYWPSFYTRAAFRAEVTLPYRP 568
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,100
Number of Sequences: 5004
Number of extensions: 52768
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)