Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_O17
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 31 0.21
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 30 0.37
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.6
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 27 3.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 3.5
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 27 3.5
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 4.6
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 4.6
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 6.0
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 8.0
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 8.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = -2
Query: 522 TSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSS 343
T+ + +T + +S S + ++ + +P +R ++P SSS P + ++ ++ N
Sbjct: 174 TAVKNVTGENILSASSSEENLNSNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCK 233
Query: 342 IESTMSLPN 316
++S SLP+
Sbjct: 234 LKSHNSLPS 242
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -1
Query: 571 TAGVAQGRHDPEG----GADNVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQV 404
+AG+ QGR G D + KN DSI PKV + + S + + ++
Sbjct: 104 SAGIGQGRAFKLGWIKKDGDKLVKNTDSITDETPKVLSEIKEHGTISDSKTLTDLKKRKL 163
Query: 403 VVRN 392
V RN
Sbjct: 164 VERN 167
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -2
Query: 540 QKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKL----APVRSSSETQPGKKT 373
+K PT QR + + A I P+SSN + + A +S SE P KK
Sbjct: 1258 RKPRPTKRQRQIMKQVAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSP-KKN 1316
Query: 372 ITLRKTKNSSIESTMSL 322
T N+ ES +SL
Sbjct: 1317 GTNISDANNKNESHVSL 1333
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Frame = -2
Query: 663 PPADDVTSSLAYLRIIISLLNTNKMIAIEAEQQALPKDDMIQKAE-PTTSQRTLTRSSAI 487
P + + +S L + ++L ++ + + +L D + + + S T + ++
Sbjct: 130 PSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSV 189
Query: 486 SQKSVDVI--VHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPNQ 313
S S P S+++ S SSS + T+T SSI ST S +
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 312 KS 307
S
Sbjct: 250 TS 251
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/105 (21%), Positives = 42/105 (40%)
Frame = -2
Query: 534 AEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKT 355
+ P++S T T S + S S SS++ S + SSS + + + +
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
Query: 354 KNSSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSIT 220
+SS S+ S+P S H + + S ++ + IT
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -2
Query: 558 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSN-NPLYRSK---LAPVRSSSET 391
P DD+ +++ +LT I S D +H E++ + LY S+ + V S S
Sbjct: 379 PSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKIDKLYVSENKAESAVASESSL 438
Query: 390 QPGKKTITLRKTKNSSIESTMSLP 319
G + +N +S+ S P
Sbjct: 439 SEGTLALKAPAPENKPEKSSTSKP 462
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 424 EARAGQVVVRNPTGQEDDYFEENQKFVNRINDEPSKPEVF 305
E++ + VRN QED++ E + V ++++ K +F
Sbjct: 1064 ESKNEETFVRNDVAQEDNFIELSSNEVRNVSNDEHKHTLF 1103
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 538 EGGADNVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQVVVRNPTGQEDDYFEE 359
EG D T + + +PK G + + E E+ + E R G R Q ++YF+
Sbjct: 52 EGEVDG-TLDPEMTHGTKPKEHGEFDTDDEEEEENPDAEFRWGYSARRRIRKQREEYFKN 110
Query: 358 NQK 350
K
Sbjct: 111 QDK 113
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 528 PTTSQRTLTRSSA--ISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKT 355
P++S L+ SSA IS S + S +P S + + SSS Q + +L +
Sbjct: 42 PSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSS 101
Query: 354 KNSSIESTMS 325
++++ S+ S
Sbjct: 102 SSATLTSSSS 111
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/92 (20%), Positives = 37/92 (40%)
Frame = -2
Query: 600 TNKMIAIEAEQQALPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSK 421
TN +++ + + + + +L+ SS I S ++ S+ S
Sbjct: 4 TNNTSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSML-SSSSATAISSSSS 62
Query: 420 LAPVRSSSETQPGKKTITLRKTKNSSIESTMS 325
+P+ SSS T P + +SS +S+ S
Sbjct: 63 SSPLSSSSFTSPASSSFITSLVSSSSQQSSSS 94
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.6 bits (56), Expect = 3.5
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = -2
Query: 597 NKMIAIEAEQQALP-KDDMIQKAEPTT-----SQRTLTRSSAISQKSVDVIVHPESSNNP 436
++M A E E +P +DD QK E T RS S+++ + + S NP
Sbjct: 602 DEMQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSL--PSRKNP 659
Query: 435 LYRSKLAPVRSSSETQPGKKTITLRKTKNSSIEST 331
+ E + G+K RK K S +E+T
Sbjct: 660 FVSDSAVLKVNKPEMKEGQKKAEARKKKESPLEAT 694
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 694 PCPLLTSLTRPARRRCDLVSRLSAHYHFII 605
P P L+S T+ + +C L+ + + H+H II
Sbjct: 277 PLPELSSDTKVDQDKCALIKQCANHFHQII 306
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = -2
Query: 558 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGK 379
P D + ++ R L++ +A+S+ + + P+S ++PL ++P SS+++
Sbjct: 88 PSDVFTLEKPIASTHRWLSKLTALSKSTNSTLSTPKSFHSPLQSRGISP--SSAQSSAAV 145
Query: 378 KTITLRKTKNSS 343
+ +K K +S
Sbjct: 146 SSSRKQKRKRTS 157
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 303 EKKHGGLRHQKAVGAQSDITLTTQTSITDDRK-ALREALYQGIFHRHRRTIFAVGS 139
EK G+ H AV + ++ TQT +TD + L L H R I V S
Sbjct: 1633 EKDDSGIDHVTAVASHFNVWPDTQTVMTDAKSTTLASLLLLASLHNRRIHITNVSS 1688
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -2
Query: 552 DDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPV-RSSSETQPGKK 376
D M+ + ++S TL + + V + NP R+KLA + +T G+
Sbjct: 592 DYMLSLFKTSSSTLTLHSLEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRS 651
Query: 375 TITLRKTKNSSIESTMSLP 319
+ L + S + + LP
Sbjct: 652 ELLLDVVRTSKVATRWLLP 670
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 549 DMIQKAEPTTSQRTLTRSSAIS-QKSVDVIVHPESSNNP 436
+M+Q + T SQR ++ SS S KS + I P++ ++P
Sbjct: 165 NMLQSTKSTASQRRMSDSSTPSTTKSKEKIFSPKALSSP 203
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 384 GKKTITLRKTKNSSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQT-SITDDRK 208
G K+ + K S E + + LEK G + + +TLT Q S+T D
Sbjct: 88 GIKSTLGERLKKDSQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESLTQDIT 147
Query: 207 ALRE 196
LR+
Sbjct: 148 DLRQ 151
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 351 NSSIESTMSLPNQKSL--EKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREALYQGI 178
N+++ ST+ P + E H +R + ++I + +TD + LRE + QG
Sbjct: 261 NATVFSTLMCPGSLIISDELNHTSIRFGARLSG-ANIRVYKHNDMTDLERVLREVISQGQ 319
Query: 177 FHRHR 163
HR
Sbjct: 320 PRTHR 324
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.0
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = -2
Query: 525 TTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNS 346
T +Q TR + S+ V +++ S V SSS QP T + S
Sbjct: 435 TVTQPASTRVQTTTVSSISTSVKQPTAS---VASSSVSVPSSSSVQPQSSTPISSSSSAS 491
Query: 345 SIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDIT 244
S +ST+S ++ E L A+ + S T
Sbjct: 492 SPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSST 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,630
Number of Sequences: 5004
Number of extensions: 49617
Number of successful extensions: 208
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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