Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O16
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.8  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   3.1  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   7.1  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   7.1  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 119 RLNASSHTTHRNHDGFFNVVDSASF 193
           RLN + + +   HDGF  V+D A F
Sbjct: 438 RLNQTMYYSQSEHDGFIGVLDIAGF 462


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 38  IHVSHHSCXSKHAINPSRCVL 100
           IH SHH C + H INP  C++
Sbjct: 19  IHFSHHCCEN-HFINPLVCLI 38


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  PRVTSLMXIQACNQSITVCAYTLLHVQIECFESHYPQ 150
           P  T+ +     + S++   Y  L   I+CFE+HYP+
Sbjct: 231 PIETATVVFDMTDFSMSNMDYGPLKFMIKCFEAHYPE 267


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 536 SVVANQTSGCNVCMFQYYMLKE 471
           ++V+N   GC+ C F+ Y  K+
Sbjct: 64  TIVSNHNVGCSCCYFRQYSTKQ 85


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 6/33 (18%), Positives = 16/33 (48%)
 Frame = -1

Query: 571 PYVLTSETKGWKVLWQTRHRVVMSVCSSTICSK 473
           P+ +   ++ W V W+     ++    S++C +
Sbjct: 48  PFTVLDASRAWMVYWELSSLAILGKLDSSVCER 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,334
Number of Sequences: 5004
Number of extensions: 51344
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)