Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O14
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    29   0.046
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 0.046
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = -1

Query: 549 PDYHNLFSPRCAYCNGPILDKCVTALEKTWHTE--HFFCAQCGQQFGEEG 406
           PD HN  + +   C  P LD CV  + + W     H  C Q G      G
Sbjct: 159 PDIHNSVTGKTTACFEPSLDYCVVKIPR-WDLGKFHRVCTQIGSSMKSVG 207


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 119 WGGHSF*VGRSFEGIPYSSSSTPTHVGHTG 208
           WG  +F +   F G+P S +      G+ G
Sbjct: 70  WGDKTFVIIMKFNGVPSSLNVITNKTGNGG 99


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 337  TAFWGEHVKVISPAVGLPVP 396
            TA + E VK+   AVG+P P
Sbjct: 1287 TATYKEDVKLPCLAVGVPAP 1306


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 104 IAVKNWGGHSF*VGRSFEGIPYSSSSTPTHVGHTG 208
           I V  W G +F      +G+P S +     +G+ G
Sbjct: 68  IDVDRWNGKTFVTILRNDGVPSSLNVISNKIGNGG 102


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 110 VKNWGGHSF*VGRSFEGIPYSSSSTPTHVGHTG 208
           V  W G +F     ++G+P S +     +G+ G
Sbjct: 73  VDQWRGMTFVTVPRYKGVPSSLNVISEKIGNGG 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,438
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)