Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O12
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    38   0.001
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    35   0.010
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   2.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   8.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.1  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -3

Query: 699 IVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFRLGIHDI 520
           +++ VDS    +GG++I VLG +         + QTF L    + ++V +DIFR    D+
Sbjct: 80  LISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFRFLREDV 139


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 696 VTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 535
           ++ +D+QP    G V++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 65  ISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 281 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 370
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 233 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 331
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 527 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLI 652
           W  + K  C +   SP G N+++ +YR    +  F++P   I
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAI 424


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 581  FNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWEST 688
            F+   C+Y    S   F+  R L+  PPS I  +ST
Sbjct: 1267 FSILTCIYNRITSGQGFSYSRLLVYLPPSQIEKKST 1302


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 507
           E +   +M  +L  +LY ISN  LSI+   + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,409
Number of Sequences: 5004
Number of extensions: 57396
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)