Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O07
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    29   1.0  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   3.1  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    27   4.1  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    26   5.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   7.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.4  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   9.4  

>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 494 SIKTPKKSHNWVYKLYALDEVLIRLFC 574
           S KT  K HNW+ +LY  +  ++ +FC
Sbjct: 138 SHKTVTKKHNWMLRLYYGNNKVLFIFC 164


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 452 MFKYSSLITKTLIQFVHINS*YEYSTSASCFTLTITLYDII 330
           +  +S L++  LI +++I   Y+Y+ +A+CF L     D++
Sbjct: 404 LLTFSRLLSAPLIAYLYI---YDYTKAAACFFLYAGFTDLV 441


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 554 LHQAHTVCIPSYGTFLGF*CFIVFLAFVE*MLFYMFKYSSL 432
           +H AHT  +   G  +GF  F++   F+   +F+ F +SSL
Sbjct: 77  IHGAHTKAVTK-GLKIGFMLFLISETFLFASIFWAFFHSSL 116


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 418 KVLVIREEYLNI*NSIYSTKARNTMKH*NP 507
           K ++ RE+Y N  +S+Y+ K RN +   NP
Sbjct: 101 KYVMPREQYENRTDSVYAWKKRNQLGRFNP 130


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 686 NFQYNFYKYNKAKIYSY 736
           NF +NF+ YN + I SY
Sbjct: 491 NFDWNFFNYNNSAIDSY 507


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 302 VQSMSDRSMYRSKLIS-VTRNSTNTRA-ARLPVVA*LIKTFVLRNYEEMKKNVKIFFVPC 129
           V++ S R ++R      + +  T  R   R PVVA  +K  V +  +   KN  +F   C
Sbjct: 196 VKTKSGRKVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKCSVCQRLQSPPKNRIVFCDGC 255

Query: 128 NTLMXMTWH 102
           NT      H
Sbjct: 256 NTPFHQLCH 264


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 683 KNFQYNFYKYNKAKIYSYFHK*FHSIK 763
           KN  Y   +Y+K  +Y   HK FH+++
Sbjct: 283 KNMVY-IPRYDKRTVYGVIHKKFHAVR 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,771
Number of Sequences: 5004
Number of extensions: 51337
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)