Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_O03
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0861 - 25486801-25486997,25487334-25487904,25488874-254889... 31 0.78
02_04_0596 + 24195863-24196179,24196257-24196359 30 1.4
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 30 1.8
11_02_0045 - 7705728-7707581 28 5.5
01_01_0996 - 7879154-7880117,7881280-7881395 28 5.5
11_01_0529 - 4158926-4158993,4160010-4160076 28 7.3
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 28 7.3
02_01_0665 + 4944756-4945151,4946758-4947259,4947909-4947979,494... 28 7.3
10_01_0327 + 3580771-3581223 27 9.7
04_01_0208 + 2596110-2596928 27 9.7
03_01_0245 + 1916718-1917443,1917534-1917719 27 9.7
>06_03_0861 -
25486801-25486997,25487334-25487904,25488874-25488976,
25489281-25489376,25490319-25490449
Length = 365
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 349 AHLCRDALPLVRPDIQGYVFWTGFKARE-ITQALSTSTRRLQAC 221
++LC + PL PD Y FW F E + + + ST LQ C
Sbjct: 318 SYLCNEKNPLTCPDADKYFFWDSFHPTEKVNRFFANST--LQIC 359
>02_04_0596 + 24195863-24196179,24196257-24196359
Length = 139
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 297 YP*ISGRTKGNASRQRCACTCC 362
+P ++G T A R+ CACTCC
Sbjct: 53 WPLVAGMTDVMAVREPCACTCC 74
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = -3
Query: 282 ALRQGKLLKPCPHPPDDYKLVNMTVPPAAIPSS-----FPFRKGR-ILANLTTAKPKHWV 121
A R +L +P P PP + + T P IPSS FP R G+ + K H+
Sbjct: 105 APRPSELAQPSPTPPQEQPVDAATTTPHHIPSSSKSIRFPLRPGKGTIGTRCMVKANHFF 164
Query: 120 A 118
A
Sbjct: 165 A 165
>11_02_0045 - 7705728-7707581
Length = 617
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -3
Query: 375 YEFLSNTYRRTFVEMHYPWCDLIFKDMFFGPALRQGKL 262
Y N + +T + + W KD FFG + KL
Sbjct: 357 YNLFGNEWLQTIYSIRHQWVPAYLKDSFFGEIINAPKL 394
>01_01_0996 - 7879154-7880117,7881280-7881395
Length = 359
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 220 QHDGPAGCHSIVFSIQKGP 164
+HDG +G HS +F I KGP
Sbjct: 300 KHDGHSGTHSKLFVIAKGP 318
>11_01_0529 - 4158926-4158993,4160010-4160076
Length = 44
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 543 YLAVEHPHVSYHNLSYLEV 487
+LA E P V++HNL +LE+
Sbjct: 20 HLAAEWPKVTWHNLDFLEI 38
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 127 LGGLWPHRHGD*GNQSESWYKDPILWCLTQEYH 29
LGG + G+ Q E +Y +PI CL +++H
Sbjct: 534 LGGPYDRLPGESPRQEEYFYSNPIPGCLCRKWH 566
>02_01_0665 +
4944756-4945151,4946758-4947259,4947909-4947979,
4948039-4948239
Length = 389
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -2
Query: 343 LCRDALPLVRPDIQGYVFWTGFKAREITQALSTSTRRLQACQHDG 209
+C D PL D Y+FW F E + + L C G
Sbjct: 344 MCNDESPLTCDDASKYLFWDAFHPTEKVNRI-MAQHTLDVCYQQG 387
>10_01_0327 + 3580771-3581223
Length = 150
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 270 GKLLKPCPHPPDDYKLVNMTVPPAAIPSSFPFR 172
G + PCP PP D +N PP P ++P R
Sbjct: 77 GYMSTPCPSPPSDVDDMN---PPERHPINYPNR 106
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 163 PALSEWKRRWNGSRRDRHV 219
P W+RRW RRDR V
Sbjct: 172 PGWRRWRRRWRRRRRDRPV 190
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 306 ISG-RTKGNASRQRCACTCCSGTH 374
+SG R G+A R AC CC G H
Sbjct: 14 LSGKRHAGDARRSSAACICCIGPH 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,799
Number of Sequences: 37544
Number of extensions: 367951
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -