Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O03
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.63 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.63 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 330 HYPWCDLIFKDMFFGPALRQGKL 262
           +YP CD  + D+FF   LR+  L
Sbjct: 214 YYPCCDEPYPDIFFNITLRRKTL 236


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 43  SNTRELDLCTSF--HSDFLNLHVYVAT 117
           S++R LDLCT F  H D L L    +T
Sbjct: 492 SDSRLLDLCTKFLMHKDSLGLSTATST 518


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 519 VSYHNLSYLEVAKLTAQRYGRRNPVYYVG 433
           +S HNL+Y+   +    +Y + N V+Y G
Sbjct: 268 LSSHNLNYVNTEQFVKSQY-QANNVHYQG 295


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 487 REIDRPAIRPPEPGVLCRAESE 422
           R I  P  RPP P +   AESE
Sbjct: 74  RPIYIPQPRPPHPRLRREAESE 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,500
Number of Sequences: 438
Number of extensions: 4205
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)