Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_O01
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.8  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 690 VTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTI 535
           + +G +FP + K  ASC  ++Y          LF  V+Q  +   +  G TI
Sbjct: 57  IVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF-AVDQINRDEDILPGITI 107


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 494 QKQKESPSPQSKRNCATKSPETTQRK 417
           +K K+S SP   ++     P+TTQR+
Sbjct: 542 KKTKQSLSPSENQSKMEILPKTTQRQ 567


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 652 QLDISREHLPDCNIRH 699
           QLDIS  +  DC I +
Sbjct: 180 QLDISNNYTTDCTIEY 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,228
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)