Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_N24
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 322 2e-89
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 3e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 3e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 7e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 5e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 1.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.1
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 4.9
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 26 4.9
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 6.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 8.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.6
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 322 bits (792), Expect = 2e-89
Identities = 157/164 (95%), Positives = 163/164 (99%)
Frame = -2
Query: 605 TLHLVLRLRGGMQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 426
TLHLVLRLRGGMQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQ
Sbjct: 66 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 125
Query: 425 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 246
LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDK
Sbjct: 126 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK 185
Query: 245 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 114
EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 186 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 229
Score = 322 bits (792), Expect = 2e-89
Identities = 157/164 (95%), Positives = 163/164 (99%)
Frame = -2
Query: 605 TLHLVLRLRGGMQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 426
TLHLVLRLRGGMQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQ
Sbjct: 142 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 201
Query: 425 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 246
LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDK
Sbjct: 202 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK 261
Query: 245 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 114
EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 262 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 305
Score = 321 bits (789), Expect = 4e-89
Identities = 156/164 (95%), Positives = 163/164 (99%)
Frame = -2
Query: 605 TLHLVLRLRGGMQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 426
TLHLVLRLRGGMQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQ
Sbjct: 218 TLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 277
Query: 425 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 246
LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDK
Sbjct: 278 LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK 337
Query: 245 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 114
EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 338 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
Score = 300 bits (737), Expect = 9e-83
Identities = 146/153 (95%), Positives = 152/153 (99%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 392 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 213
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 212 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 114
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (370), Expect = 3e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 164 IQKESTLHLVLRLRGGM 114
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (365), Expect = 1e-37
Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 392 IQKESTLHLVLRLRGG-MQIFVKTLTGK 312
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2
Query: 605 TLHLVLRLRGGM 570
TLHLVLRLRGG+
Sbjct: 66 TLHLVLRLRGGI 77
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (370), Expect = 3e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 164 IQKESTLHLVLRLRGGM 114
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 151 bits (365), Expect = 1e-37
Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 392 IQKESTLHLVLRLRGG-MQIFVKTLTGK 312
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2
Query: 605 TLHLVLRLRGGM 570
TLHLVLRLRGG+
Sbjct: 66 TLHLVLRLRGGI 77
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 164 IQKESTLHLVLRLRGG 117
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 150 bits (363), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 392 IQKESTLHLVLRLRGG 345
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2
Query: 605 TLHLVLRLRGG 573
TLHLVLRLRGG
Sbjct: 66 TLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 164 IQKESTLHLVLRLRGG 117
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 150 bits (363), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 392 IQKESTLHLVLRLRGG 345
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -2
Query: 605 TLHLVLRLRGG 573
TLHLVLRLRGG
Sbjct: 66 TLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 7e-20
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 164 IQKESTLHLVLRLRGG 117
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/76 (51%), Positives = 55/76 (72%)
Frame = -2
Query: 572 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 393
M I V TLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 392 IQKESTLHLVLRLRGG 345
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -2
Query: 542 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 381
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -2
Query: 314 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 153
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -2
Query: 344 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 165
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 164 IQKESTLHLVLRL 126
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -2
Query: 524 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 354
V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -2
Query: 545 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 372
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -2
Query: 317 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 144
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.6
Identities = 34/137 (24%), Positives = 58/137 (42%)
Frame = +1
Query: 121 PRSLKTKCKVDSFWML*SDSVRPSSSCLPAKINRC*SGGIPSLS*ILAFTFSMVSDASTS 300
P S + + S + SD P +S + ++ S PS+S + TFS + STS
Sbjct: 150 PSSTSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTS 206
Query: 301 NVMVLPVSVLTKICMPPLRRNTKCRVDSF*ML*SDSVRPSSSCLPAKINRC*SGGIPSLS 480
+ + SV++ P ++ S S SSS + ++ S S S
Sbjct: 207 SSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS 266
Query: 481 *ILAFTFSIVSDASTSS 531
+ + SI+S +S+SS
Sbjct: 267 ---SSSSSIISSSSSSS 280
Score = 25.4 bits (53), Expect = 6.5
Identities = 28/113 (24%), Positives = 51/113 (45%)
Frame = +1
Query: 238 IPSLS*ILAFTFSMVSDASTSNVMVLPVSVLTKICMPPLRRNTKCRVDSF*ML*SDSVRP 417
+PS + + T S + +ST + +L S ++ +P + + + S + SD P
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPS-STSVEVSISSSSLSSSD---P 169
Query: 418 SSSCLPAKINRC*SGGIPSLS*ILAFTFSIVSDASTSSVMVLPVSVXTKICMP 576
+S + ++ S PS+S + TFS + STSS + SV + P
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSP 222
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 152 ILSGCCSQIVYGHLQAVCPQRSIAADPEE--FPL 247
+L+G C+ I+Y H V +R+ PE+ +PL
Sbjct: 379 VLAGACTPIIYVHYNRVYTRRNGVMSPEDRLYPL 412
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -2
Query: 569 QIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 396
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 395 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 306
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 341 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 168
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 167 NIQKESTLHLVL 132
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 4.9
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = +2
Query: 416 HLQAVCLQRSIAADLGEFPLYPESWL 493
+L+ +C+QR + ++ +F + +WL
Sbjct: 3 YLRVLCVQRRLVREINKFSSFESNWL 28
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 526 KLKHLTLLRM*KPRFRIKREFPQISSD*SLQANSLKMVVHYLTTTF 389
K KH+ LL R ++ E P+ S+ N LKM VHYL + +
Sbjct: 201 KYKHIPLLE--NIRNKVLTEVPK---QFSVDKNQLKMFVHYLPSYY 241
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 182 YGHLQAVCPQRSIAADPEEFPLCPESWLSHFRWCQMLQLP 301
Y L +C + + P E+W + + W +MLQ P
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWTNLYYWREMLQRP 419
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 442 SLQANSLKMVVHYLTTTFRKNLLCIWCYVSEVACRSLSKHLPVKPSHWKLKHLTPSKM*K 263
S+Q ++ T+ KN I+C+ + L ++ P S W TP+K+ +
Sbjct: 2096 SIQRTKVRSDGDPFITSLNKNQSRIFCFREPIRISKLLQNFPALLSKWS----TPTKLVE 2151
Query: 262 P-RFR 251
P +FR
Sbjct: 2152 PSQFR 2156
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 176 IVYGHLQAVCP-QRSIAADPEEFPLCPESWLSHFR 277
++Y L C QR + F L ESWL H R
Sbjct: 261 LIYNILHKFCLYQRLNLLSQQTFQLSRESWLGHLR 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,959
Number of Sequences: 5004
Number of extensions: 50650
Number of successful extensions: 176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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