Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_N19
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 39 0.001
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.082
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 32 0.11
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 29 0.58
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 28 1.3
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.8
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 28 1.8
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 27 3.1
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 4.1
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 26 7.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.4
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 9.4
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 612 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 433
L +D L +Y AG T AD + + + + + K Y N+KRW V S P
Sbjct: 148 LDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPAC 206
Query: 432 QEANEK 415
+ A EK
Sbjct: 207 RIAAEK 212
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 32.3 bits (70), Expect = 0.082
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -3
Query: 416 KDWRHSRDLSIACLKSE-HLSTRNENLFKITSLELNLTN*AELKRHCL 276
K+ H++ +S+ CL S+ +L ++ +FK ++ELN N ++KR+ L
Sbjct: 58 KNHLHNKHVSLYCLLSDRYLQPPSKRIFKRWNMELNNLNCPDIKRYIL 105
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -2
Query: 639 AKNEKVQEALQLLDKFLEGQ----KYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 472
A+ K+ +AL+ ++ E Q KY P L LS A+ S+ S + +
Sbjct: 116 AEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQ 175
Query: 471 RWYETVKSTAPGYQEANEKGLEA 403
WY+ V G E +E EA
Sbjct: 176 HWYDRVLEGLVGANENSENNREA 198
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 29.5 bits (63), Expect = 0.58
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 22 KNEKKSIKTIHDLNKHCERDSGIL*NSIIQTSTGISKWVSHDKKRNVSIKCEQIILNLLI 201
KN+ S++TI D NK+C +G++ G+S+ + K + + Q I N L
Sbjct: 160 KNDGFSVETIEDFNKYCHYVAGLV-------GIGLSRLFAQSKLEDPDLAHSQAISNSLG 212
Query: 202 YFQAK 216
F K
Sbjct: 213 LFLQK 217
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = -1
Query: 217 PLPESKLINLI*SVRILSIR-FVFCHVIPILIFQLTF--VLLNFTIFHYHVHNVCSSHEW 47
P+P+ K++ + +LSI+ V H+IP + F L + ++L+ ++F H+ ++ S H
Sbjct: 126 PIPKKKVLKNR-AKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLF--HISHLISFHFL 182
Query: 46 F*CSFFRF*VYSF 8
F SF F + SF
Sbjct: 183 F-FSFLSFPLLSF 194
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 70 CERDSGIL*NSIIQTSTGISKWVSHDKKRNVSIKCEQIILNLLIYFQAKG 219
C+ D + N+ + + +W+ KK+ + +CE +IL++L + + G
Sbjct: 1138 CQHDDYLQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLKFSG 1187
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 367 SLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPS 471
S +K++++ L CL +L+ +TRS T+ + V S
Sbjct: 51 SWYKYSLESGLVCLYLYLIYRWITRSFTVKQTVGS 85
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 675 YPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLE 511
Y Q + + +NE ++ L +L+ L+ + Y+ T+ADLS I+ + LE
Sbjct: 124 YHQELVISAITRYRNE-IKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFLE 177
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = -2
Query: 771 SLYPEDPKARVLVDQRLYFDI---GTLYQR--FSDYFYPQVFAGAPADKAKNEKVQEALQ 607
SL +DP+ L+ Q L+F G ++ + + ++F+ + A + +NE ++ L
Sbjct: 89 SLSFDDPEYYKLI-QYLFFQASGQGVIWGQAGWFNFFHHEPVVSA-VTRYRNE-IKRVLG 145
Query: 606 LLDKFLEGQKYVAGPNLTVADLSLI 532
+L+ L+ + Y+ T+ADLS I
Sbjct: 146 VLEDILKDRDYLVANKYTIADLSFI 170
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 480 NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNS 382
+V + YE+++S Y+ ANEK EA +V+S
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSS 771
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.1
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -2
Query: 654 APADKAKNEKVQEALQLLDKFLE--GQKYVAGPNLTVADLSLIA-SVSSLEASDIDFKK- 487
+PA+ A NE V+EA Q L + G Y+ T A I + LEA+ +
Sbjct: 291 SPAE-AFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNEL 349
Query: 486 YANVKRWYETVKS----TAPGYQEANEKGLEAFKGL 391
Y NV+ E +S +AP Y+E +K LE + L
Sbjct: 350 YDNVENGNEAKRSLEYNSAPNYRELYDKELEEIRNL 385
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 597 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 499
+F Q+Y+ + DL ++A SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 616 SPSAAGQVPRRSEVRGRTEPHRRRPES 536
+PSAA +VP++ + + +P RR S
Sbjct: 115 TPSAASEVPKKKYKKIKVDPSARRTSS 141
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 385 IDKSLECLQSFLVGLLVTRSCTLNRLVPSLNVGVFLE 495
++ S CLQS L G V + + VPS NV F E
Sbjct: 216 VNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYFRE 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,368
Number of Sequences: 5004
Number of extensions: 58491
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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