Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N16
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    29   0.55 
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    28   0.95 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.7  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   2.9  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   5.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.7  

>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 128 TSTLKLKVNKRSKERRHLHVILERNTFTAYRPLVTSRLTLGSSEREEEA-N*FTSVAEGR 304
           T  L+ ++N++   R +       +   AYR  +  ++  G ++  EEA + F   A G+
Sbjct: 236 TGALRTEINEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAIHYFFRAASGQ 295

Query: 305 ELGQSERLA 331
            +G   R+A
Sbjct: 296 HVGAMHRMA 304


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 129 VRQSFFFTYSVAF*YFYKTTADXMNFWTDL 40
           V  ++FF Y V F +   T A    FWTD+
Sbjct: 158 VSWNYFFNYFVTFPFELTTCAITFTFWTDV 187


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 382 STH--LRSPPRVLLIWPPTRKPLTLPQLTPLSNTGELI 275
           +TH  + SPP   ++   T +PL+ P + P SN+  L+
Sbjct: 154 NTHDSVNSPPSYGIMASATNQPLSHPTIVPSSNSSSLL 191


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 373 LRSPPRVLLIWPPTRKPLTLPQLTPL 296
           + SP ++ ++ PP   P +LPQL PL
Sbjct: 83  IASPRQMQVLTPPLSCPESLPQLEPL 108


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 516 GTLPAHQXWNAPRSPIM 466
           GTL AH+ WN P  P M
Sbjct: 312 GTLWAHEQWNLPYPPDM 328


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
 Frame = +3

Query: 291 LLRGVSWGRVSGLRV--------GGQMSSTRGGDLRCVEDA-GTIVG 404
           LLR + W R  GLRV        G Q S   GG L  +E   GT+ G
Sbjct: 257 LLRSIEWAREQGLRVNLDLHAAPGNQNSWNHGGYLNQMEWLDGTVKG 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,140
Number of Sequences: 5004
Number of extensions: 29373
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)