Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_pT_N16
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0155 - 17773121-17773576,17773744-17774322 33 0.10
07_03_1714 + 28946888-28947118 31 0.73
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 30 1.3
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 29 2.9
05_01_0373 + 2922604-2922921 28 5.1
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 28 5.1
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 28 5.1
01_06_0993 + 33647301-33647618 28 5.1
10_07_0019 + 11931519-11932310 27 6.8
02_02_0068 + 6536756-6537253 27 6.8
01_03_0286 - 14657682-14657803,14658194-14658419,14659894-146598... 27 6.8
>03_04_0155 - 17773121-17773576,17773744-17774322
Length = 344
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 249 GARKGKKRRINSPVLLRGVSWGRVSGLRVGGQMSSTRGGDLRCVEDAGTIVGXS 410
G R G R V+ RG GRV+G GG+ ++ RGG V G ++G S
Sbjct: 15 GRRGGGSARRAKAVVRRG--GGRVAGTSGGGREAARRGGAAAAVRQGGRVLGRS 66
>07_03_1714 + 28946888-28947118
Length = 76
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 246 WGARKGKKRRINSPVLLRGVSWGRVSGLRVGGQMSSTRGGDL 371
W R+GKK+R+ + +G GRV G+ V G + + RGG L
Sbjct: 31 WSTREGKKKRVTATQQPKG-RGGRVGGVDV-GFVGTWRGGKL 70
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 155 KRSKERRHLHVILERNTF---TAYRPLVTSRLTLGSSEREEEAN*FTSVAEGRELGQSER 325
K S E RHL + LER A + L R GS+E+E E N +AE + + ER
Sbjct: 634 KSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEIN-QKKIAELKMELERER 692
Query: 326 LARGRPNEQHARRRPQV 376
R + E++ + +V
Sbjct: 693 NERIKLEEEYEEVKNEV 709
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 128 TSTLKLKVNKRSKERRHLHVILERN 202
T++LKLK NK+S ++H H + E N
Sbjct: 851 TNSLKLKQNKKSARQKHHHGVPEGN 875
>05_01_0373 + 2922604-2922921
Length = 105
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 512 RFPLTRXGMLPAHQSWNGAPSWQSGAPXHQPXNIR 408
R P R + PA +W P+W+ GAP +R
Sbjct: 55 RRPSGRRRLRPASATWWRRPTWRGGAPAPMKTTMR 89
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 397 MVPA-SSTHLRSPPRVLLIWPPTRKPLTLP 311
MVP ST PP VL ++PP R T+P
Sbjct: 303 MVPTMGSTGFPPPPTVLHMYPPPRGQFTMP 332
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 285 PVLLRGVSWGRVSGLRVGGQMSSTRGGDLRCVEDAGTIVGXS 410
PV+L G ++GR+ G+ +G Q ST L V + ++G S
Sbjct: 499 PVILTGATYGRLVGMLIGSQ--STLDHGLFAVLGSAALLGGS 538
>01_06_0993 + 33647301-33647618
Length = 105
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 512 RFPLTRXGMLPAHQSWNGAPSWQSGAPXHQPXNIR 408
R P R + PA +W P+W+ GAP +R
Sbjct: 55 RRPSGRRRLRPASATWWRRPTWRGGAPAPMKTTMR 89
>10_07_0019 + 11931519-11932310
Length = 263
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 EREEEAN*FTSVAEGRELGQSE-RLARGRPNEQHARR 364
+RE F + EGRELG E R A G H RR
Sbjct: 194 KRENTQRAFHFIGEGRELGMREGRTAMGNTAGGHGRR 230
>02_02_0068 + 6536756-6537253
Length = 165
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 297 RGVSWGRVSGLRVGGQMSSTRGG 365
RG WG G RVGG + +GG
Sbjct: 23 RGEQWGEEEGERVGGGARAEKGG 45
>01_03_0286 -
14657682-14657803,14658194-14658419,14659894-14659899,
14661218-14661298,14662498-14662888,14663207-14663352,
14665455-14665562
Length = 359
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 281 FTSVAEGRELGQSERLARGRPNEQHARRRPQVCRGCRNHRWL 406
F+ VA GR L RG N + + Q C+NHRW+
Sbjct: 212 FSVVACGRRLVAGRDTGRGTTNNRSSATLEQ----CKNHRWV 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,378,133
Number of Sequences: 37544
Number of extensions: 233770
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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