Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N16
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    31   0.49 
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   3.4  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    27   6.0  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    27   6.0  

>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 229 YEPAHFGELGKGRRGELIHQCC 294
           Y+P  F ELG G+R  + H+CC
Sbjct: 330 YDPIAFSELGIGKRTVIRHECC 351


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
            protein Y54G2A.21 protein.
          Length = 967

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 152  NKRSKERRHLHVILERNTFTAYRPLVTSRLTLGSSEREEEAN*FTSVAEGRELGQSERLA 331
            N R K+RR++HV+ E         +  +    G S  +   N  TS+A G   G S ++ 
Sbjct: 810  NYRDKKRRYIHVLRELMCRNIMNDMTMNTSIPGLSIPDFSQNVQTSIAFG---GNSTKIG 866

Query: 332  -RGRPNEQHARRRP 370
             RG P+   +R  P
Sbjct: 867  FRGLPSNALSRPNP 880


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 400 TMVPASSTHLRSPPRVLLIWPPTRKPLTLPQLTPLSNTGELIR 272
           T++PA+            IWP T +P+T      +S+T + IR
Sbjct: 255 TILPATEAQKIFTKPQYQIWPTTTRPMTSTSQAVISSTEQFIR 297


>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 VKKKD*RTSTLKLKVNKRSKERRHLHVILERNTFTAYRPL--VTSRLTLGSSEREE 268
           +KK D     L   +  +++  R L + L+R  FTA R L  +T R+++G+  + +
Sbjct: 721 IKKPDDLRDELGRPIVPQNQTSRTLRIFLKRTYFTAARRLQDLTDRVSMGARAKSQ 776


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 VKKKD*RTSTLKLKVNKRSKERRHLHVILERNTFTAYRPL--VTSRLTLGSSEREE 268
           +KK D     L   +  +++  R L + L+R  FTA R L  +T R+++G+  + +
Sbjct: 721 IKKPDDLRDELGRPIVPQNQTSRTLRIFLKRTYFTAARRLQDLTDRVSMGARAKSQ 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,978,365
Number of Sequences: 27780
Number of extensions: 175821
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)