Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N16
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   10.0 

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 455 PSWQSGAPXHQPXNIR 408
           P W S +  H P  IR
Sbjct: 242 PYWMSSSQYHMPKEIR 257


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 455 PSWQSGAPXHQPXNIR 408
           P W S +  H P  IR
Sbjct: 242 PYWMSSSQYHMPKEIR 257


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 339 RPRASRSLCPSSRPSATLVN*FASSSLSELPK 244
           RP+ +R       P+ TL     S S +ELPK
Sbjct: 350 RPKKTRLRWMMEIPNVTLPTSTYSGSPTELPK 381


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 376 HLRSPPRVLLIWPPTRKPLTLPQLTPLSNTGELI 275
           H +S   + L  PP R P +  Q +    T  L+
Sbjct: 666 HTQSQLHLHLTSPPARSPSSQAQASQCPQTASLL 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,497
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)