Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_pT_N15
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.4  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    26   4.5  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   7.9  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   7.9  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   7.9  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   7.9  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 511 PGFMH-IFNKDNIRNLAHDPEHRQLMPQSS 597
           P F H  F KDN R++   P H Q  P SS
Sbjct: 107 PSFNHSFFEKDNARDIPQQPSHSQ-NPSSS 135


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 267  KKSKDAWSNLESESPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTS 88
            K  KD+  N   +   ++  IH     K +T  +  EL+  L   Q+  NKL  QL   +
Sbjct: 1344 KALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLN 1403

Query: 87   DDWQL 73
             + +L
Sbjct: 1404 QEIRL 1408


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 475 ISFEQSIIEI*YPGFMHIFNKDNIRNLAHDPEHRQLMPQSSCNRVQCGFRL 627
           +SF+Q        G+ +  +KD +RN+     H + + Q  C   Q  +R+
Sbjct: 1   MSFQQRFARALDVGYKNFLSKDAVRNIFAYDNHLRGLVQKECKIHQTPYRV 51


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 484 EQSIIEI*YPGFMHIFNKDNIRNLAHDPEHRQLMPQSSCN 603
           E  ++ +   G +H F+   + N+   PE ++L+ +S  N
Sbjct: 59  EVMVLVVSETGLVHTFSTPKLENVVKSPEGQKLITESLIN 98


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 322 VSHFWYWTLLTW-FVYF 369
           +SH+ YW +L W F+Y+
Sbjct: 46  LSHYQYWRILLWQFIYW 62


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 228 SPVISYRIHESTPIKVDTVTQNKELAEFLLKRQILQNKLAKQLRKTSDDWQ 76
           S +I  +  E+ P+K    TQ K+ A  +  R + QN+L ++L   S +W+
Sbjct: 581 SKIIHIQKLENGPLKTFGPTQIKDKARLIKARFMKQNRL-QELYSKSLNWK 630


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 539 SLLKICMKPGY*ISIIDCSKLILEKTTHQLIQGIYLRQNS 420
           S L + MK GY + + D S+  L    ++ ++GIY   NS
Sbjct: 75  SKLPLKMKKGYSVHLKDQSRDALTDYRYKSMKGIYSEANS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,051
Number of Sequences: 5004
Number of extensions: 61087
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)